Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5330g00012 ATGGAAATGGCTCTCAGTACGCACAGAGTTTCATTTTCCTTCTCCATGGCTAGTCCTTCTAGCCTTCGAAGGACCTCTTCTCCTCTTATGTTTGCTAACCCACTATTTGGCCTTCGCTTTTCTTCCTCACCGCCCACCAAACTGCCTCTGCAATTTGTTTCCAGGAACTCTACACACGGGCCTATCAAATGCTCCGTTTCTGAAGCTACAGAACCCAAGACTGAGAAGAAGAAACAGCTGGAGAGAAGAAGAGACATAAGAAACATAGCAATTGTGGCTCATGTTGATCACGGAAAAACAACTTTGGTTGATGCGATGCTGAAACAAACAAAGGTATTTCGTGATAATCAGTTTGTACAGGAAAGAATTATGGATTCAAATGATTTGGAGCGTGAAAGAGGAATTACAATACTAAGTAAAAATACATCTGTCACCTATAAAGACACCAAGATTAATATAATAGATACTCCAGGTCACTCTGACTTTGGAGGTGAAGTGGAGCGCATTCTAAATATGGTGGAAGGAATCCTTTTAGTGGTAGACTCTGTTGAAGGTCCAATGCCACAGACCAGATTTGTTTTAAAGAAGGCCCTAGAGTTTGGGCATGCAGTTGTCGTCGTTGTCAATAAAATTGATAGACCTTCTGCTCGGCCGGACTTCGTCATCAATTCTACTTTTGAACTGTTTCTTGAACTAAATGCATCAGATGAACAGTGTGACTTCCAAACAATATACGCTAGTGGTATAAAGGGACAAGCAGGACTATCTCCTGAAAAATTGGCTGAAGATCTTGGCCCATTATTTGAAGCTATAATCAGATGCATCCCTGGACCACATATTGAAAAAGATGGTGCACTGCAAATGCTTGCTACAAATATTGAGTATGATGAACATAAAGGGCGCATAGCAATTGGACGCTTGCAAGCTGGAGTATTAGAAAAGGGCATGGACGTCAGGGTATGTACTACTGAGGATTCATGCAGATATGGAAGAATCAGTGAGCTTTTTGTGTATGACAAATTCAGTAGGGTCCCTGCAGCACGTGTGGAGGCTGGTGATATATGTGCTGTATGTGGAATTGCTGATATTCAGATTGGGGAAACAATTGCTGACAAAGTATCAGGGAAGCCACTGCCATCCATCAGGGTGGAAGAACCTACAGTGAAAATGTCTTTTTCTATAAACACTTCACCTTTTGTTGGGCGGGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGACAGACTCTCTCGTGAGCTAGAGCGAAATTTGGCCATGAGAGTTGAAGATGGTGAAACAGCAGATACCTTTATTGTCAGTGGTCGTGGTACTTTGCACATAACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTAGGTCCTCCCAAAGTTATAAACAAGAAAGTGGGTGACCAACTGCAGGAACCATATGAGATTGCCACCGTGGAGGTACCAGAAGAACATATGGGAGCTGTTGTTGAACTTCTGGGCAAGAGGCGAGGACAAATGTTCGATATGGAAGGAGTTGGATCGGAAGGAACTACCCTACTCAAATATAAGATTCCAACCCGTGGCCTTTTAGGACTGCGGAATTCTATCTTAACAGCTTCCCGTGGAACAGCAATTCTCAACACTATCTTTGATAGCTATGGGCCTTGGGCTGGGGACATCAGTACTCGGGATCAAGGCTCACTGGTTGCTTTTGAAGATGGAACAAGTACTTCGTATGCGCTTGCTAGTTCACAGGAGAGGGGACAGATGTTTATTGGTCCTGGAGTGGATGTTTACAAAGGTCAAATTGTCGGCATCCATCAGCGACCTGGGGATTTGGCCTTAAATGTTTGCAAGAAAAAGGCTGCAACAAACATTCGTTCCAACAAGGAACAAACAGTGGTTCTCGACACACCACTGGATTATAGTCTGGATGACTGCATCGAATACATCCAAGAAGATGAACTAGTAGAGGTCACTCCCCAAAGCATCCGAATGTGCAAGAATCCTAAACTAGCCAAGAAAACAAGGTAG 2037 0.4315 MEMALSTHRVSFSFSMASPSSLRRTSSPLMFANPLFGLRFSSSPPTKLPLQFVSRNSTHGPIKCSVSEATEPKTEKKKQLERRRDIRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDFVINSTFELFLELNASDEQCDFQTIYASGIKGQAGLSPEKLAEDLGPLFEAIIRCIPGPHIEKDGALQMLATNIEYDEHKGRIAIGRLQAGVLEKGMDVRVCTTEDSCRYGRISELFVYDKFSRVPAARVEAGDICAVCGIADIQIGETIADKVSGKPLPSIRVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLSRELERNLAMRVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVGDQLQEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMEGVGSEGTTLLKYKIPTRGLLGLRNSILTASRGTAILNTIFDSYGPWAGDISTRDQGSLVAFEDGTSTSYALASSQERGQMFIGPGVDVYKGQIVGIHQRPGDLALNVCKKKAATNIRSNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCKNPKLAKKTR 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5330g00012 678 NCBIfam small GTP-binding protein domain 86 219 IPR005225 GO:0005525
Pral5330g00012 678 Gene3D - 470 563 - -
Pral5330g00012 678 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 286 IPR027417 -
Pral5330g00012 678 SUPERFAMILY EF-G C-terminal domain-like 479 594 IPR035647 -
Pral5330g00012 678 SMART EFG_C_a 476 565 IPR000640 -
Pral5330g00012 678 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 84 279 IPR000795 GO:0003924|GO:0005525
Pral5330g00012 678 NCBIfam translational GTPase TypA/BipA 86 674 IPR006298 GO:0003924|GO:0005525
Pral5330g00012 678 Gene3D Elongation Factor G (Translational Gtpase), domain 3 387 670 - -
Pral5330g00012 678 CDD BipA_III 386 464 IPR047043 -
Pral5330g00012 678 Pfam Elongation factor G C-terminus 477 562 IPR000640 -
Pral5330g00012 678 FunFam GTP-binding protein TypA 280 380 - -
Pral5330g00012 678 SUPERFAMILY Translation proteins 233 379 IPR009000 -
Pral5330g00012 678 FunFam GTP-binding protein TypA 387 491 - -
Pral5330g00012 678 CDD BipA_TypA_II 286 379 IPR047042 -
Pral5330g00012 678 CDD BipA_TypA_C 479 558 IPR035651 -
Pral5330g00012 678 Gene3D bipa protein 564 643 IPR042116 -
Pral5330g00012 678 Gene3D - 83 279 IPR027417 -
Pral5330g00012 678 FunFam GTP-binding protein TypA 564 650 - -
Pral5330g00012 678 PRINTS GTP-binding elongation factor signature 152 162 IPR000795 GO:0003924|GO:0005525
Pral5330g00012 678 PRINTS GTP-binding elongation factor signature 204 213 IPR000795 GO:0003924|GO:0005525
Pral5330g00012 678 PRINTS GTP-binding elongation factor signature 88 101 IPR000795 GO:0003924|GO:0005525
Pral5330g00012 678 PRINTS GTP-binding elongation factor signature 132 140 IPR000795 GO:0003924|GO:0005525
Pral5330g00012 678 Pfam Elongation factor Tu GTP binding domain 85 276 IPR000795 GO:0003924|GO:0005525
Pral5330g00012 678 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 558 670 - -
Pral5330g00012 678 Gene3D Translation factors 280 380 - -
Pral5330g00012 678 Pfam Elongation factor Tu domain 2 300 369 IPR004161 GO:0005525
Pral5330g00012 678 FunFam GTP-binding protein TypA 83 279 - -
Pral5330g00012 678 CDD TypA_BipA 85 278 IPR047041 -
Pral5330g00012 678 FunFam GTP-binding protein TypA 470 563 - -
Pral5330g00012 678 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 125 140 IPR031157 -
Pral5330g00012 678 SUPERFAMILY EF-G C-terminal domain-like 384 468 IPR035647 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5330g00012 Pral-Chr5330 42287 50367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5330g00012 84 213 Eukaryotic Initiation Factors Gene Family AT3G22980 43.939 2.67e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5330g00012 K06207 - gmx:100785222 1166.37