Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5330g00007 ATGCCTTCTACAGTAAATGAATTTCTTGCGCCACCTAGACAGCCGGAGCTTGTTGGCCATTCAACAGCATGCGCATCTTACCCTTATCCAGATCCACAGCATAGGGGAGCAATTCCTACTTTTGGACTTCAGCCTTTGTTACATCCTGCTGGTCTTGGAGTGAATTCCTCTAGAATGGTTTTACCATTGCAAATGGAAGAAGAACCTGTTTATGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCAATCCCGTGCCAAGGCTGAGCTTGAAAAGAAGGTGATAAAAGCGAGAAAGCCTTATCTTCATGAGTCTCGACATTTGCATGCCTTGAGACGAGCAAGAGGGTGTGGAGGCCGTTTTCTGACAACAAAGAAGGCTGATGGTCCTGCTGCAAATACAGCAAACAAGAACCAGGAAACTATTAGTTCAGACCCCAAAGGCACATCTCCCAATTTGTCTGCCATTGCTGACTCAAATTCTGGTTCCCGAGAAATCTTCAATTCCCCCCAATCAGACGTGCACTCCAGGTCTAATGGCAGCAATTATTACTCGCACATTCAGGGATCTGAGCTGTCTGGTTATCAACCTCTCTCAAGTGATAGAGGAAGCCGAAAGGATTTCTCTGGTGCTTGCAGGGCCCTGAGCATTAAATAA 663 0.46 MPSTVNEFLAPPRQPELVGHSTACASYPYPDPQHRGAIPTFGLQPLLHPAGLGVNSSRMVLPLQMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKARKPYLHESRHLHALRRARGCGGRFLTTKKADGPAANTANKNQETISSDPKGTSPNLSAIADSNSGSREIFNSPQSDVHSRSNGSNYYSHIQGSELSGYQPLSSDRGSRKDFSGACRALSIK 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5330g00007 220 PRINTS CCAAT-binding transcription factor subunit B signature 69 91 IPR001289 GO:0003700|GO:0006355
Pral5330g00007 220 PRINTS CCAAT-binding transcription factor subunit B signature 100 123 IPR001289 GO:0003700|GO:0006355
Pral5330g00007 220 ProSitePatterns NF-YA/HAP2 subunit signature. 71 91 IPR018362 GO:0003677|GO:0016602
Pral5330g00007 220 Gene3D - 66 127 - -
Pral5330g00007 220 MobiDBLite consensus disorder prediction 123 211 - -
Pral5330g00007 220 SMART cbf3 65 126 IPR001289 GO:0003700|GO:0006355
Pral5330g00007 220 MobiDBLite consensus disorder prediction 131 205 - -
Pral5330g00007 220 ProSiteProfiles NF-YA/HAP2 family profile. 66 126 IPR001289 GO:0003700|GO:0006355
Pral5330g00007 220 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 7 180 IPR001289 GO:0003700|GO:0006355
Pral5330g00007 220 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 68 123 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5330g00007 Pral-Chr5330 18375 21926 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5330g00007 15 171 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.266 7.73e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral5330g00007 CBFB_NFYA 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5330g00007 K08064 - qsa:O6P43_006531 226.098