Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5330g00003 ATGAGACAAAAATTGGACCCTGCAAACCGTTATGAATCAGATCTATGGAGCAACAAACTATATACGACCTGTTCTCAAGCTTGGTGGCATGGCACAGGGCACGGTGCCTTCTCTAAAGAGATGGCAGGGCAAGTCAAAATGAATTCTTTTGTGCCGCATTGGGATGGTAGTTTTGGGAACCCGACCAGTACTTCACACGCTATGACTTTGCTGGCTGAAGGGAAGGAAGCCACCAAAGAGAAAGGTAGAGAAAAGTATCAAGAGCATCAACAGCAGCAATTTGCTGTCCGTACTATGCCTTCTACAGTAAATGAATTTCTTGCGCCACCTAGACAGCCGGAGCTTGTTGGCCATTCAACAGCATGCGCATCTTACCCTTATCCAGATCCACAGCATAGGGGAGCAATTCCTACTTTTGGACTTCAGCCTTTGTTACATCCTGCTGGTCTTGGAGTGAATTCCTCTAGAATGGTTTTACCATTGCAAATGGAAGAAGAACCTGTTTATGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCAATCCCGTGCCAAGGCTGAGCTTGAAAAGAAGGTGATAAAAGCGAGAAAGCCTTATCTTCATGAGTCTCGACATTTGCATGCCTTGAGACGAGCAAGAGGGTGTGGAGGCCGTTTTCTGACAACAAAGAAGGCTGATGGTCCTGCTGCAAATACAGCAAACAAGAACCAGGAAACTATTAGTTCAGACCCCAAAGGCACATCTCCCAATTTGTCTGCCATTGCTGACTCAAATTCTGGTTCCCGAGAAATCTTCAATTCCCCCCAATCAGACGTGCACTCCAGGTCTAATGGCAGCAATTATTACTCGCACATTCAGGGATCTGAGCTGTCTGGTTATCAACCTCTCTCAAGTGATAGAGGAAGCCGAAAGGATTTCTCTGGTGCTTGCAGGGCCCTGAGCATTAAATAA 957 0.4608 MRQKLDPANRYESDLWSNKLYTTCSQAWWHGTGHGAFSKEMAGQVKMNSFVPHWDGSFGNPTSTSHAMTLLAEGKEATKEKGREKYQEHQQQQFAVRTMPSTVNEFLAPPRQPELVGHSTACASYPYPDPQHRGAIPTFGLQPLLHPAGLGVNSSRMVLPLQMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKARKPYLHESRHLHALRRARGCGGRFLTTKKADGPAANTANKNQETISSDPKGTSPNLSAIADSNSGSREIFNSPQSDVHSRSNGSNYYSHIQGSELSGYQPLSSDRGSRKDFSGACRALSIK 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5330g00003 318 ProSiteProfiles NF-YA/HAP2 family profile. 164 224 IPR001289 GO:0003700|GO:0006355
Pral5330g00003 318 MobiDBLite consensus disorder prediction 229 288 - -
Pral5330g00003 318 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 166 221 IPR001289 GO:0003700|GO:0006355
Pral5330g00003 318 Coils Coil 72 92 - -
Pral5330g00003 318 PRINTS CCAAT-binding transcription factor subunit B signature 167 189 IPR001289 GO:0003700|GO:0006355
Pral5330g00003 318 PRINTS CCAAT-binding transcription factor subunit B signature 198 221 IPR001289 GO:0003700|GO:0006355
Pral5330g00003 318 Gene3D - 164 225 - -
Pral5330g00003 318 SMART cbf3 163 224 IPR001289 GO:0003700|GO:0006355
Pral5330g00003 318 ProSitePatterns NF-YA/HAP2 subunit signature. 169 189 IPR018362 GO:0003677|GO:0016602
Pral5330g00003 318 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 69 278 IPR001289 GO:0003700|GO:0006355
Pral5330g00003 318 MobiDBLite consensus disorder prediction 221 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5330g00003 Pral-Chr5330 16752 21926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5330g00003 113 269 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.266 1.39e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral5330g00003 CBFB_NFYA 3.8e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5330g00003 K08064 - qsa:O6P43_006531 285.419