Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5329g00002 ATGAATCACTTGACTACTGAGACTGAAGATGCTTTTGTAAGCTTGCTTGAGTTTGCAGCTAATAATGATGTTGAGGGTTTTGAACGACTGATTGAGCGTGATCCATCCTGTGTCCATGAGGCTGGACTATGGTATGGTCGTGGAAAGGGTTCAAAACCTATGGTCAACGAGCAGAGAACCCCTTTGATGGTTGCTGCCACTTATGGTAGCATTGGTGTCGTGAAGCTGATTCTATCACTATCCAATGCTAACATAAATCGTCCCTGTGGCCTTGACAAGAGCACTGCACTTCATTGTGCTGCGTCAGGTGGAGCTGCTAATGCGGTTGATGTTGTAAAATTGCTCTTATCAGCAGGTGCTGATCCAAGTTCCGTGGATGCCAATGGTCACCGTCCAGTTGACGTTATTGTTGTTCCTCCCAAGCTTGATCATGTCAAAAGCAGTCTTGAAGAACTTCTTCGAACTGATGACTCTATAGCAGGGTTTAATCTTAGGGTTAACACAACCACATCAAAAGCTGAATCGCCACCTTTATCAACTTCACCAGAGAATGAGTCTCCATCTTCTGCACTAGATGCCCTCTTGAAGTCAAAGTCAAATGACGCTCCTGTTTTTCATGCACCAGAGAAGAAAGAATATCCTGTTGATCCATCTCTTCCAGACATCAAGAACAGCATATATGCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGGCCTTGTTCACGTGCTTATTCCCATGATTGGACTGAATGTCCTTTTGTCCATCCGGGAGAAAATGCCCGGAGAAGGGACCCAAGGAAGTTCCACTATAGCTGTGTTCCTTGTCCTGAATTTCGGAAGGGGGCTTGCCGACGTGGCGATATGTGTGAGTATGCACATGGAGTTTTTGAGTGTTGGCTACATCCAGCCCAATATCGAACCCGTCTCTGCAAGGATGGAACAAATTGCAATAGAAGAGTTTGTTTCTTTGCCCATACTGCTGAGGAGCTTCGGTCTCTACATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCGTTCAAGCACACCTGCCATGGATTTTGCTGCAGCTATGAGCCTGTTGCCTGGCTCCCCTTCCTCTATGTCTGTCATTTCCCCTTCACCATTCACTTCGCCCATGTCTCCTTCTGCCAATGGCATGCCATACTCTTCAGCTGCTTGGTCACAAGCCAATGTCCCATCTTTGCACTTGCCTGGAAGTAATCTTCATTGCAGTCATTTGAGATCCTCGCATAATGCTAGAGATATTCCTGTGGAAGACTTGGATTTGTTGTCAGAATATGAGGTTCAGCAACAACAGCTCCTTAATGAGTTGTCTTGCCTTCCTCAACAACCAATGAATTCTAATAGCATGAATCAGCCAGTTCGTATGAAGACCTTGACCCATTCAAATCTCGATGATCTATTTTCTGCTGAGAACTCTTCCCCTCGATTTGCTGATCCAGCAATGGCCTCAAGTGTTTACTCCCCAACCCACAAATCTGCTGTTCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTATCACCTGTCAATACAAAATTTCCTTCCAAGAATGCTGACCATCCTTTATTGCAGACTTCTTTTGCCGTTCAGTCGTCAGGAAGGATGTCACCACGCAAAGTGGAACCTATTTCACCGATGAGCTCCAGAATTTCTATGCTAGCTCAACGTGAGAAGCTGCAACAATTCCGTAGCCTTAGCTCTCGGGAACTTGGCTCCAGCTCTGCGGCTGCTGTTGCTGGTTCCTCAATCAATTCTTGGTCCAACTGGGGTTCCCCGAACGGTAAGTTGGATTGGGCCGTCAGCACCGATGACATGGGTAAATTCCATAGATCTTCTTCATTTGAGCTTGGGCACAATGGCGAGGAACCTGACCTATCATGGGTACAGTCTTTAGTCAAAGAACCTCCAGGTGAGATTAAAGAGCCGGCCGCTAGTGTCCCAGGCATGGCAGTGGCCGGAACCTCGGCCGACGGATCAAATGTTAGTGCGCAAATCGAACCTGTGGATCATGCGGTATTGGGGGCATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2100 0.4662 MNHLTTETEDAFVSLLEFAANNDVEGFERLIERDPSCVHEAGLWYGRGKGSKPMVNEQRTPLMVAATYGSIGVVKLILSLSNANINRPCGLDKSTALHCAASGGAANAVDVVKLLLSAGADPSSVDANGHRPVDVIVVPPKLDHVKSSLEELLRTDDSIAGFNLRVNTTTSKAESPPLSTSPENESPSSALDALLKSKSNDAPVFHAPEKKEYPVDPSLPDIKNSIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCNRRVCFFAHTAEELRSLHVSTGSAVPSPRSSTPAMDFAAAMSLLPGSPSSMSVISPSPFTSPMSPSANGMPYSSAAWSQANVPSLHLPGSNLHCSHLRSSHNARDIPVEDLDLLSEYEVQQQQLLNELSCLPQQPMNSNSMNQPVRMKTLTHSNLDDLFSAENSSPRFADPAMASSVYSPTHKSAVLNQFQQQQSLLSPVNTKFPSKNADHPLLQTSFAVQSSGRMSPRKVEPISPMSSRISMLAQREKLQQFRSLSSRELGSSSAAAVAGSSINSWSNWGSPNGKLDWAVSTDDMGKFHRSSSFELGHNGEEPDLSWVQSLVKEPPGEIKEPAASVPGMAVAGTSADGSNVSAQIEPVDHAVLGAWLEQMQLDHLVAQQN 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5329g00002 699 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Pral5329g00002 699 PANTHER UNKEMPT FAMILY MEMBER 17 643 IPR045234 -
Pral5329g00002 699 Gene3D - 2 142 IPR036770 -
Pral5329g00002 699 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Pral5329g00002 699 Pfam Ankyrin repeats (3 copies) 19 124 IPR002110 GO:0005515
Pral5329g00002 699 Pfam CCCH-type zinc finger 276 296 IPR041367 -
Pral5329g00002 699 SUPERFAMILY Ankyrin repeat 15 137 IPR036770 -
Pral5329g00002 699 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Pral5329g00002 699 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Pral5329g00002 699 Gene3D - 272 335 - -
Pral5329g00002 699 MobiDBLite consensus disorder prediction 170 190 - -
Pral5329g00002 699 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Pral5329g00002 699 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Pral5329g00002 699 SMART ANK_2a 57 87 IPR002110 GO:0005515
Pral5329g00002 699 SMART ANK_2a 92 124 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5329g00002 Pral-Chr5329 8785 12760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5329g00002 7 692 C2H2 Transcription Factor Family AT5G12850 51.983 0.0 658
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5329g00002 Ank_2 3.5e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5329g00002 - - qsa:O6P43_006533 1051.58