Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5328g00003 ATGGATTCTTGCAGAAAGTCTCCCTTAAAGCCATGGAAGAAAGGACCAAGCAGGGGGAAAGGTGGCCCTCAGAATGCTATGTGCGAGTATCGAGGTGTTCGTCAGAGAACGTGGGGAAAATGGGTTGCTGAGATCAGAGAGCCGAAGAAGAGAACTAGGCTCTGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAAGCGGCGAGGAGACTCTATGGTCCAGATGCTTACCTTAATCTTCCCCACCTTCAACCCACCTCCAGCTCCGCCATTAAATCTCAAAAGTTTAAATGGTTTCCTTCCAAGAATTTCATTTCAATGTTCCCTTCTCGTGGATTGCTCAACGTTAATGCTCAACCTAGTGTTCATGTAATCCACCAAAAGCTACAACAACTCAAGCAGAATGGAGTTCCAAGTCACACTCCCTCTAGTTCATCCTGTGATCCAAAGGCTGAAGTTCAGATTATAGGAAGCAAGCATAATGCAGACAATCCTTCAAACGAAAAAGAAGCTAAAACATCGTCAGAAAGTGTGTTTAGTGATATTCAGGACAAACCCCAGATTGACCTCCATGAGTTTCTTCAACAGATGGGAGTGCTGAAGGATGAAAAACAGTCGGGAAGTTCCACAAAGTCTGAAGTTTTATCAAATGATTTCACTGATAATTTTGGTGAATGTTCTGACAAGAGTGTCAATTGGGAGGAATTAATGGAGATGCATGCAGTTGCAGATAATCAAGGATCAGAGGCAACCCAATTTCAAGCGTATGACATAAATGAAGAGCTTACTTTCACCACTTCGATTTGGAACTTCTAA 831 0.4332 MDSCRKSPLKPWKKGPSRGKGGPQNAMCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDAYLNLPHLQPTSSSAIKSQKFKWFPSKNFISMFPSRGLLNVNAQPSVHVIHQKLQQLKQNGVPSHTPSSSSCDPKAEVQIIGSKHNADNPSNEKEAKTSSESVFSDIQDKPQIDLHEFLQQMGVLKDEKQSGSSTKSEVLSNDFTDNFGECSDKSVNWEELMEMHAVADNQGSEATQFQAYDINEELTFTTSIWNF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5328g00003 276 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Pral5328g00003 276 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Pral5328g00003 276 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Pral5328g00003 276 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Pral5328g00003 276 MobiDBLite consensus disorder prediction 163 183 - -
Pral5328g00003 276 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Pral5328g00003 276 MobiDBLite consensus disorder prediction 1 28 - -
Pral5328g00003 276 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Pral5328g00003 276 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 242 - -
Pral5328g00003 276 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Pral5328g00003 276 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Pral5328g00003 276 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5328g00003 Pral-Chr5328 17167 18512 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5328g00003 5 276 AP2-EREBP Transcription Factor Family AT3G57600 50.896 1.62e-88 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5328g00003 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5328g00003 - - gmx:100801311 411.764