Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5326g00019 ATGTCATTGATCATATTTTCAGAGGATTATGCTTCTTCAAGGTGGTGCTTAGACGAGCTGGTGCAGATTATTGAGTGTATGGAGAAGCAGAAACAGATTGTAATTCCTGTTTTCTATAATACGGATCCCTCTGATGTGAGGCATCAAAAAGGGTCTTATGGAGATGCTTTTGTCAAACATGACAAACATAATAAGGAAAAGGTGCCAATTTGGAAATCAGCTTTGAAGAAAGCGGCTAATTTATCTGGGTTTCATTCATCAAATTATGAGGATGAGGCTGAGCTTATAGAAGTGATTGCCAAGTGTTTGTCAAAAAGGTTGAATATTATGTTCCAAAGTGACTTAACGGGCCTTGTTGGAATTGATGAAAGGATTGCAGATTTAGAATCGCTAATGAACCAAGGGTCAGAAAATGTCCGAGTCATTGGAATTTGGGGCATGGGCGGTATCGGTAAGACAACTATCGCAGCTGCAGTATTTAATCGATTCTATTCTGAATATGAAGGATATTGTTTTTTGGCACATGTGAGAGAAGAATCAGAGAATCATGGGATTATGTATTTGAAGAATAGAATTCTTTCTATACTACTCAAGGAAAATGATTTGCATATTGGTACGCCCAATGGAATACCTCCTTATGTTAGGCGAAGGCTTCTTCGAACAAGAGTTCTGGTTGTTCTTGATGATATCAGTGATTCTGATCAACTGGAAAATTTAGTGGGAGCTCTTGACTGCTTTGGATCTGGTAGTAGAATCATTATAACAACAAGGGATAAGCAAGTGCTGGCTAAAAGAGTTGACAAAATATACGAGGTTAAGCCATTGATATTTGATGATGCTGTTCAACTTTTTATGTCGAATGCCTTTGAGAATAATTATCTAGACATGGAGTGGATTGAACTATCAAGGAAGGTGATCAGTTATGCAAAAGGCATTCCCTTAGCTCTGAAAGTTTTGGGTTCTTTTCTTTATGGCAAAAGCAAGGAAGAATGGGAGAGCCAACTTGAGAAGCTCAACAAAATGCCACATGCAAAAATTCAGGACGTCATGAGATTGAGTTATGATAAACTAGATAGAGAAGAGAAGAATATTTTCTTGTACGTCGCATGTTTCCTTAAAGGATACAAAGCACAACAAATAGTAGTTTTACTAAATGCTTGTGGTTTTTCATCAATTATCGGGCTCAAAGTGCTTCGAGACAAAGCTCTTATCACTGAAATCAAAGGATCAAATTCAGGAGCATCAAGAATATTTATGCATGATTTGATACAGGAAATGGGTTGGGAGATTGTTCGTGAAGAATCAATTTATGATCCTGGAAAACGCAGTCGATTGTGGGATGCTAATGATATATATCGAGTATTGGAGCATAACCTGGGGACTAAAGCCATTCAAAGCATAACTTTGAATGTGGCAAAAATTGAAGAGCTCTGCTTAACTCCTCAAGCCTTTGCTGAGATGTCAGAGCTAAAATTTCTTAGATTTTCTCAGAATGATGTTGATGAAGAAACTTTGCCAAATGAACTGAGATGTCATGGCCTTGAATCTTTGCCAAATGAACTGAGATTTCTTCATTGGGATTGCTGTCCTTTAAAATCTTTGCCCTCCACATTCCGTCCAGAAAGTCTTGTTGAACTTAACATGACTTGGAGTCGTGTGGAGAAACTTTGGGATGGAGCCCTGCGTCTTGTGAATTTAAAGAAAATTGACCTCAGTAATTCCAAGCACCTATTGGAACTCCCAGATTTTTCTATGGCCAAAAATCTTGAAGAAGTTGAACTCTACAACTGTAAAAGCTTGTGTAAGGTTCATCCTTCGATTTTAACCATCCACAAACTTGTGAAATTGAACCTTATATATTGCACATCACTTACCAGCCTTAGAAGTGAAGTCCATTTAAGATCCCTGAGTAGTCTTTCTCTTGGTGAATGCTCAAGGCTCAAAGAATTCTCTTTGACATCAGAGAATATGAGGGACTTGAGTTTGGCAGGCACAGCTATCAATGAATTGCCTTCATCCATGAGGCTTCTAAACAAACTTGAAACATTTGACTTGCATCGTTGTAAAAGCCTTAAGAATCTTCCAAGCAAGTCAACTAACCTCCATTCTCTTCGAGAACTCAGGATCTTTGGTTGCATGCAGCTTGATGCATCGAATTTACACTTGTTACTTGATGGTTCGAGGTTCTTGGAAACACTGTTACTGCAAGATTGTCGTAATTTATTTGAACTTCCAGACACCATCAGATTCCTATCCTCATTGAAGCATTTATCCCTAAATGAAACAGATATTGAGAGGTTGCCTACAAGCATCAAGCATCTTCCTCAACTTGAAAAACTTGACTTGAGTAATTGTAGGAGGCTTCAGTCTTTGCCTAATCTTCCACTAAGCATTAAAGAACTATATGTCACTAACTGCACTTCCCTGGAGAGAGTCATGTTTTCTTCAATGGCTGCCGATCATCTGACGGGAAAAATACGAGTCTGCACCATATTCCAGAATTGTGTGAACTTGGATGCACAGTCACTCGCAGCTGTAGGAGTGAATTCTCATGTCAACATTAAGAGATTGGCAAATGAACATTTATCAACTCTAGGAAAAAGTAAGATCCTAGATGGCCCAGTTGATGTTATTTATCCAGGAAGCAGTGTTCCAGAGTGGTTCATCAACAGGACAAGGCAGTCATCAGTAACTATTGACTTATCTTCTGCTCCACCTTCCGTCTTTATGGGTTTCATTTTTTGTGCGGTTGTCTGTAAGTTCGCATCAAATGACAGCAACCTCGTCGGATGTGACTGCTGCATGGAGATTAATGGTACAAGGAACAAGAATATGGGTGCATGGACTAGCATATCTGCTTGTGAATTTATGTCTGATCATGTATGTCTGTGGTACGATGAACGATGCTGTCTGAAAACTGACGAAAACATGGAAGCAGATGAAACCAATAACAAGAAAATATCATTTGAGTTCTTTGCACAAACTGGGAGTATCTGGGAGAAGAAAAAAGATATTGTGATAAAAGAATGTGGAGTCTGCCCCGTATATGCCTCAGAACATCACAAATTCATTGAGCAAATGGAGTTGGAGTTGAAGTCACAGCTTAAAGCAATCGGTGAGAACAAACATGAGAAGACAATTCCTTCAGCTCAAAAGTCCAATGAACATATCTTTCCACTTCCCAGTGGATCTTGGAAGAAAGCAACACAAGGCTTAAGAGATCTCCTCAGCTTGTGA 3237 0.3899 MSLIIFSEDYASSRWCLDELVQIIECMEKQKQIVIPVFYNTDPSDVRHQKGSYGDAFVKHDKHNKEKVPIWKSALKKAANLSGFHSSNYEDEAELIEVIAKCLSKRLNIMFQSDLTGLVGIDERIADLESLMNQGSENVRVIGIWGMGGIGKTTIAAAVFNRFYSEYEGYCFLAHVREESENHGIMYLKNRILSILLKENDLHIGTPNGIPPYVRRRLLRTRVLVVLDDISDSDQLENLVGALDCFGSGSRIIITTRDKQVLAKRVDKIYEVKPLIFDDAVQLFMSNAFENNYLDMEWIELSRKVISYAKGIPLALKVLGSFLYGKSKEEWESQLEKLNKMPHAKIQDVMRLSYDKLDREEKNIFLYVACFLKGYKAQQIVVLLNACGFSSIIGLKVLRDKALITEIKGSNSGASRIFMHDLIQEMGWEIVREESIYDPGKRSRLWDANDIYRVLEHNLGTKAIQSITLNVAKIEELCLTPQAFAEMSELKFLRFSQNDVDEETLPNELRCHGLESLPNELRFLHWDCCPLKSLPSTFRPESLVELNMTWSRVEKLWDGALRLVNLKKIDLSNSKHLLELPDFSMAKNLEEVELYNCKSLCKVHPSILTIHKLVKLNLIYCTSLTSLRSEVHLRSLSSLSLGECSRLKEFSLTSENMRDLSLAGTAINELPSSMRLLNKLETFDLHRCKSLKNLPSKSTNLHSLRELRIFGCMQLDASNLHLLLDGSRFLETLLLQDCRNLFELPDTIRFLSSLKHLSLNETDIERLPTSIKHLPQLEKLDLSNCRRLQSLPNLPLSIKELYVTNCTSLERVMFSSMAADHLTGKIRVCTIFQNCVNLDAQSLAAVGVNSHVNIKRLANEHLSTLGKSKILDGPVDVIYPGSSVPEWFINRTRQSSVTIDLSSAPPSVFMGFIFCAVVCKFASNDSNLVGCDCCMEINGTRNKNMGAWTSISACEFMSDHVCLWYDERCCLKTDENMEADETNNKKISFEFFAQTGSIWEKKKDIVIKECGVCPVYASEHHKFIEQMELELKSQLKAIGENKHEKTIPSAQKSNEHIFPLPSGSWKKATQGLRDLLSL 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5326g00019 1078 PRINTS Disease resistance protein signature 217 231 - -
Pral5326g00019 1078 PRINTS Disease resistance protein signature 141 156 - -
Pral5326g00019 1078 PRINTS Disease resistance protein signature 309 323 - -
Pral5326g00019 1078 PRINTS Disease resistance protein signature 772 788 - -
Pral5326g00019 1078 Gene3D - 111 272 IPR027417 -
Pral5326g00019 1078 Pfam Leucine rich repeat 730 786 IPR001611 GO:0005515
Pral5326g00019 1078 Gene3D - 1 110 IPR035897 -
Pral5326g00019 1078 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 703 IPR044974 GO:0006952
Pral5326g00019 1078 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 84 IPR035897 -
Pral5326g00019 1078 Pfam NB-ARC domain 129 356 IPR002182 GO:0043531
Pral5326g00019 1078 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 367 IPR027417 -
Pral5326g00019 1078 Gene3D - 275 358 IPR042197 -
Pral5326g00019 1078 Gene3D Ribonuclease Inhibitor 655 838 IPR032675 -
Pral5326g00019 1078 Gene3D Ribonuclease Inhibitor 446 654 IPR032675 -
Pral5326g00019 1078 SUPERFAMILY L domain-like 419 834 - -
Pral5326g00019 1078 Pfam TIR domain 2 120 IPR000157 GO:0007165
Pral5326g00019 1078 Pfam C-JID domain 879 1019 IPR045344 -
Pral5326g00019 1078 ProSiteProfiles TIR domain profile. 1 107 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5326g00019 Pral-Chr5326 92443 96119 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5326g00019 3 787 WRKY Transcription Factor Family AT4G12020 33.877 4.33e-114 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5326g00019 - - ccaj:109805840 1393.25