Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5325g00008 ATGGATGCCTTCTCGCCTGCACAGCTTCTTCCCATTTCCTTTGAGAAGCCAACTCCTACTTGTTTTCTTTCTCACTCACAAAATCATACCTTCAATTTTTTCTTTTCCACGTATCACGTCAACCCTGGTCTCCGCTTTATCTCCAAGTTCAGAACTCCACAATCCCTTTTAAATACGTCTTCCTTGGCCCCCGGAGCAGTTGATAAAATTGGTTCTCATGCGTTAAGAGAAATATGCGAAGCCCATGTTCCCCGGCATATATTAGACAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGACAAGCATTGCCTTCTCTTTTATCTGGTCGCGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACGCTCGCATACGTGCTTCTGATATATTCCGTCATAGACGCTGCAAAATCTGCCGTGCAAGCTCTTGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGAGGTTGAGAAGGAGCACAAGTCATATACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAATGATAGTAGTCGCAACAGTGGGGAGTTTATGCCATATAATTGAAAGACAATTTTTAAAGCTAGAAACTGTGCGGGTGTTAGTAGTGGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAACTTTTAACTCTGTATTCGTCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCGTCTATACCACAACACAGGCGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGGTCCATATTCATGTCAGCCCAGTTGAGCCCATGCCATCACGCCTGCATCATAGATTTGTAGTATGTCATAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGCCAGTGAGCAGTCTAAGAGGTCAAAACAGGCAGGAAATGCTCCATCAACGTCCCTTCTGGTTGACTTTCTGAAGACTTCATACCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGATATGAATTTCAATTCACGGGCAGTTTCACTGTTGGAGGCAAGGAAAGGTGGCGGCTATCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCGGAAATGTCCCACATTTACAACTTTGATCTGCCCAAGACTGCCATAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACTATCATAGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTTATAA 1428 0.4349 MDAFSPAQLLPISFEKPTPTCFLSHSQNHTFNFFFSTYHVNPGLRFISKFRTPQSLLNTSSLAPGAVDKIGSHALREICEAHVPRHILDRMEEIGYVMPTDVQRQALPSLLSGRDCILHAQTGSGKTLAYVLLIYSVIDAAKSAVQALVVVPTRELGMQVAKVARMLAASPTEVEKEHKSYTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLETVRVLVVDEVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPSRLHHRFVVCHRNKKQQTLLSLIQSDAPESGIIFASEQSKRSKQAGNAPSTSLLVDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEARKGGGYLLVATDIASRGVDLPEMSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNCEELTL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5325g00008 475 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
Pral5325g00008 475 CDD DEADc 87 282 - -
Pral5325g00008 475 Pfam Helicase conserved C-terminal domain 318 437 IPR001650 -
Pral5325g00008 475 Gene3D - 302 473 IPR027417 -
Pral5325g00008 475 SMART ultradead3 95 309 IPR014001 -
Pral5325g00008 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 442 IPR027417 -
Pral5325g00008 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 475 IPR001650 -
Pral5325g00008 475 Gene3D - 63 286 IPR027417 -
Pral5325g00008 475 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 75 466 - -
Pral5325g00008 475 SMART helicmild6 355 439 IPR001650 -
Pral5325g00008 475 CDD SF2_C_DEAD 306 437 - -
Pral5325g00008 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5325g00008 Pral-Chr5325 14079 17839 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5325g00008 95 458 Eukaryotic Initiation Factors Gene Family AT3G13920 26.558 5.66e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5325g00008 - - gmx:100786205 688.337