Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5325g00007 ATGGATGCCTTCTCGCCTGCACAGCTTCTTCCCATTTCCTTTGAGAAGCCAACTCCTACTTGTTTTCTTTCTCACTCACAAAATCATACCTTCAATTTTTTCTTTTCCACGTATCACGTCAACCCTGGTCTCCGCTTTATCTCCAAGTTCAGAACTCCACAATCCCTTTTAAATACGTCTTCCTTGGCCCCCGGAGCAGTTGATAAAATTGGTTCTCATGCGTTAAGAGAAATATGCGAAGCCCATGTTCCCCGGCATATATTAGACAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGACAAGCATTGCCTTCTCTTTTATCTGGTCGCGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACGCTCGCATACGTGCTTCTGATATATTCCGTCATAGACGCTGCAAAATCTGCCGTGCAAGCTCTTGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGAGGTTGAGAAGGAGCACAAGTCATATACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAATGATAGTAGTCGCAACAGTGGGGAGTTTATGCCATATAATTGAAAGACAATTTTTAAAGCTAGAAACTGTGCGGGTGTTAGTAGTGGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAACTTTTAACTCTGTATTCGTCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCGTCTATACCACAACACAGGCGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGGTCCATATTCATGTCAGCCCAGTTGAGCCCATGCCATCACGCCTGCATCATAGATTTGTAGTATGTCATAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGCCAGTGAGCAGAGGTCAAAACAGGCAGGAAATGCTCCATCAACGTCCCTTCTGGTTGACTTTCTGAAGACTTCATACCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGATATGAATTTCAATTCACGGGCAGTTTCACTGTTGGAGGCAAGGAAAGGTGGCGGCTATCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCGGAAATGTCCCACATTTACAACTTTGATCTGCCCAAGACTGCCATAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACTATCATAGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTTATAA 1422 0.4353 MDAFSPAQLLPISFEKPTPTCFLSHSQNHTFNFFFSTYHVNPGLRFISKFRTPQSLLNTSSLAPGAVDKIGSHALREICEAHVPRHILDRMEEIGYVMPTDVQRQALPSLLSGRDCILHAQTGSGKTLAYVLLIYSVIDAAKSAVQALVVVPTRELGMQVAKVARMLAASPTEVEKEHKSYTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLETVRVLVVDEVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPSRLHHRFVVCHRNKKQQTLLSLIQSDAPESGIIFASEQRSKQAGNAPSTSLLVDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEARKGGGYLLVATDIASRGVDLPEMSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNCEELTL 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5325g00007 473 Gene3D - 302 471 IPR027417 -
Pral5325g00007 473 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
Pral5325g00007 473 CDD DEADc 87 282 - -
Pral5325g00007 473 CDD SF2_C_DEAD 306 435 - -
Pral5325g00007 473 SMART ultradead3 95 309 IPR014001 -
Pral5325g00007 473 Pfam Helicase conserved C-terminal domain 318 435 IPR001650 -
Pral5325g00007 473 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 75 464 - -
Pral5325g00007 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 440 IPR027417 -
Pral5325g00007 473 SMART helicmild6 353 437 IPR001650 -
Pral5325g00007 473 Gene3D - 63 286 IPR027417 -
Pral5325g00007 473 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
Pral5325g00007 473 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 473 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5325g00007 Pral-Chr5325 14079 17839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5325g00007 95 456 Eukaryotic Initiation Factors Gene Family AT3G13920 26.703 1.71e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5325g00007 - - gmx:100786205 681.404