Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5325g00006 ATGGATGCCTTCTCGCCTGCACAGCTTCTTCCCATTTCCTTTGAGAAGCCAACTCCTACTTGTTTTCTTTCTCACTCACAAAATCATACCTTCAATTTTTTCTTTTCCACGTATCACGTCAACCCTGGTCTCCGCTTTATCTCCAAGTTCAGAACTCCACAATCCCTTTTAAATACGTCTTCCTTGGCCCCCGGAGCAGTTGATAAAATTGGTTCTCATGCGTTAAGAGAAATATGCGAAGCCCATGTTCCCCGGCATATATTAGACAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGACAAGCATTGCCTTCTCTTTTATCTGGTCGCGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACGCTCGCATACGTGCTTCTGATATATTCCGTCATAGACGCTGCAAAATCTGCCGTGCAAGCTCTTGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGAGGTTGAGAAGGAGCACAAGTCATATACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAACTTTTAACTCTGTATTCGTCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCGTCTATACCACAACACAGGCGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGGTCCATATTCATGTCAGCCCAGTTGAGCCCATGCCATCACGCCTGCATCATAGATTTGTAGTATGTCATAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGCCAGTGAGCAGTCTAAGAGGTCAAAACAGGCAGGAAATGCTCCATCAACGTCCCTTCTGGTTGACTTTCTGAAGACTTCATACCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGATATGAATTTCAATTCACGGGCAGTTTCACTGTTGGAGGCAAGGAAAGGTGGCGGCTATCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCGGAAATGTCCCACATTTACAACTTTGATCTGCCCAAGACTGCCATAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACTATCATAGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTTATAA 1323 0.4361 MDAFSPAQLLPISFEKPTPTCFLSHSQNHTFNFFFSTYHVNPGLRFISKFRTPQSLLNTSSLAPGAVDKIGSHALREICEAHVPRHILDRMEEIGYVMPTDVQRQALPSLLSGRDCILHAQTGSGKTLAYVLLIYSVIDAAKSAVQALVVVPTRELGMQVAKVARMLAASPTEVEKEHKSYTVMALLDGGTLRRHKSWLKVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPSRLHHRFVVCHRNKKQQTLLSLIQSDAPESGIIFASEQSKRSKQAGNAPSTSLLVDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEARKGGGYLLVATDIASRGVDLPEMSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNCEELTL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5325g00006 440 Pfam Helicase conserved C-terminal domain 283 402 IPR001650 -
Pral5325g00006 440 Pfam DEAD/DEAH box helicase 100 210 IPR011545 GO:0003676|GO:0005524
Pral5325g00006 440 SMART ultradead3 95 274 IPR014001 -
Pral5325g00006 440 CDD SF2_C_DEAD 271 402 - -
Pral5325g00006 440 SMART helicmild6 320 404 IPR001650 -
Pral5325g00006 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 283 440 IPR001650 -
Pral5325g00006 440 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 223 431 - -
Pral5325g00006 440 Gene3D - 68 207 IPR027417 -
Pral5325g00006 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 254 IPR014001 -
Pral5325g00006 440 Gene3D - 267 438 IPR027417 -
Pral5325g00006 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 402 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5325g00006 Pral-Chr5325 14079 17839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5325g00006 95 423 Eukaryotic Initiation Factors Gene Family AT3G13920 25.905 1.47e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5325g00006 - - qsa:O6P43_003412 621.313