Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5325g00005 ATGGATGCCTTCTCGCCTGCACAGCTTCTTCCCATTTCCTTTGAGAAGCCAACTCCTACTTGTTTTCTTTCTCACTCACAAAATCATACCTTCAATTTTTTCTTTTCCACGTATCACGTCAACCCTGGTCTCCGCTTTATCTCCAAGTTCAGAACTCCACAATCCCTTTTAAATACGTCTTCCTTGGCCCCCGGAGCAGTTGATAAAATTGGTTCTCATGCGTTAAGAGAAATATGCGAAGCCCATGTTCCCCGGCATATATTAGACAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGACAAGCATTGCCTTCTCTTTTATCTGGTCGCGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACGCTCGCATACGTGCTTCTGATATATTCCGTCATAGACGCTGCAAAATCTGCCGTGCAAGCTCTTGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGAGGTTGAGAAGGAGCACAAGTCATATACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAATGATAGTAGTCGCAACAGTGGGGAGTTTATGCCATATAATTGAAAGACAATTTTTAAAGCTAGAAACTGTGCGGGTGTTAGTAGTGGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAACTTTTAACTCTGTATTCGTCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCGTCTATACCACAACACAGGCGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGGTATGTCATAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGCCAGTGAGCAGTCTAAGAGGTCAAAACAGGCAGGAAATGCTCCATCAACGTCCCTTCTGGTTGACTTTCTGAAGACTTCATACCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGATATGAATTTCAATTCACGGGCAGTTTCACTGTTGGAGGCAAGGAAAGGTGGCGGCTATCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCGGAAATGTCCCACATTTACAACTTTGATCTGCCCAAGACTGCCATAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACTATCATAGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTTATAA 1359 0.4327 MDAFSPAQLLPISFEKPTPTCFLSHSQNHTFNFFFSTYHVNPGLRFISKFRTPQSLLNTSSLAPGAVDKIGSHALREICEAHVPRHILDRMEEIGYVMPTDVQRQALPSLLSGRDCILHAQTGSGKTLAYVLLIYSVIDAAKSAVQALVVVPTRELGMQVAKVARMLAASPTEVEKEHKSYTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLETVRVLVVDEVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKVCHRNKKQQTLLSLIQSDAPESGIIFASEQSKRSKQAGNAPSTSLLVDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEARKGGGYLLVATDIASRGVDLPEMSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNCEELTL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5325g00005 452 Gene3D - 282 452 IPR027417 -
Pral5325g00005 452 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 452 IPR001650 -
Pral5325g00005 452 CDD DEADc 87 282 - -
Pral5325g00005 452 SMART ultradead3 95 297 IPR014001 -
Pral5325g00005 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 419 IPR027417 -
Pral5325g00005 452 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
Pral5325g00005 452 Gene3D - 63 281 IPR027417 -
Pral5325g00005 452 SMART helicmild6 332 416 IPR001650 -
Pral5325g00005 452 CDD SF2_C_DEAD 282 414 - -
Pral5325g00005 452 Pfam Helicase conserved C-terminal domain 295 414 IPR001650 -
Pral5325g00005 452 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 289 443 - -
Pral5325g00005 452 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5325g00005 Pral-Chr5325 14079 17840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5325g00005 95 441 Eukaryotic Initiation Factors Gene Family AT1G72730 26.344 2.87e-30 119