Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5322g00036 ATGATGGAGCTTGGCTTGAGCTTAGGAGCTTCAAAGCCTTTCACTTTCATGGAAAAGCCTTCTGAATTACAAGCTCCTCTCAGCAACAACCAGAAACTCGACTTAGGCATCAACACTGCTTTATCCATTGGTCCGATCAGTACCAGCAAAAGCTGCGACGACGATCTTCGTCAAGAACAAGAAGACGAAGAACATCATCAAGAACAAGCCAAGAAGAAGGAAAATCACAGTACAGTCAAGGAAGATCAAGCTTCAGATTATAAATTGATCTCTTCTGCTTCTCTTTCCTCTTCTTCCAACAAATCCAATAACAACCATAACTCTTTACAGCTCCATCTTCTTCCTCACTCCAAACCTCTCCCTCTCTCCTCCTTCTCATGGCCGCCTCCTTCTGAGAACTGTGATGAGATGGCAGCTAATCCGGCGATGGGTTTGAAGGTGAAGACGATGCCGGAGGAGGAAGAGTCGGAGGAGAGGACGGTGCTGTCATCGTCTCCGATGAGCGGAGCGTCGTCGTTTCAGGTGGATCTGTGTATATACAGTAATAATAGCATGAGTGGATCAGGAAATTACCATAATAATAGTAATAACAGCAACAGAAAGAGACAGATTAATGAATCAGAAGGTGAGGGTAATTATTACTACGACCGAAGGGGTTGTTCTTCAAGAGCAAGCGATGAAGACGACAACCACAACGACAACAACGTTGGTGTTCGTGGTGGTACCAGAAAGAAGCTCAGGCTCTCTAAGGAGCAATCTGCTTTTCTTGAAGAGAGCTTCAAGGAGCACAGTACTCTTAATCCTAGACAAAAACTTGCTCTTGCCAAACAACTCAATCTTCGTCCTCGCCAAGTCGAAGTCTGGTTCCAAAACCGAAGAGCAAGGACGAAGCTGAAGCAGACGGAGGTGGACTGTGAGTACTTGAAGAGATGCTGTGAGACGCTATCAGAAGAGAACAGGAGGCTTCAGAAGGAGCTTCAGGAACTGAGGGCTTTGAAGGCCTCAAACTCAAACCCTTTCTTCATGCAATTACCAGCCACCACCTTGACCATGTGCCCTTCCTGTGAGCGCGTCGCCTCCAATCCCTCCTCCTCCAATAATAACAATAATTCTCCTTCTGCTTCTGCTTCTGCTTCTTCCTCCAAACCAGTTGCCTTCCCCTTCGCCAAACCCAAGTTCTGTCCTTTCCCTCACTCCAAACCGCACCAGTCCTGA 1215 0.4683 MMELGLSLGASKPFTFMEKPSELQAPLSNNQKLDLGINTALSIGPISTSKSCDDDLRQEQEDEEHHQEQAKKKENHSTVKEDQASDYKLISSASLSSSSNKSNNNHNSLQLHLLPHSKPLPLSSFSWPPPSENCDEMAANPAMGLKVKTMPEEEESEERTVLSSSPMSGASSFQVDLCIYSNNSMSGSGNYHNNSNNSNRKRQINESEGEGNYYYDRRGCSSRASDEDDNHNDNNVGVRGGTRKKLRLSKEQSAFLEESFKEHSTLNPRQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLSEENRRLQKELQELRALKASNSNPFFMQLPATTLTMCPSCERVASNPSSSNNNNNSPSASASASSSKPVAFPFAKPKFCPFPHSKPHQS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5322g00036 404 MobiDBLite consensus disorder prediction 357 382 - -
Pral5322g00036 404 CDD homeodomain 243 300 IPR001356 GO:0003677
Pral5322g00036 404 MobiDBLite consensus disorder prediction 150 169 - -
Pral5322g00036 404 FunFam Homeobox-leucine zipper protein 18 225 304 - -
Pral5322g00036 404 MobiDBLite consensus disorder prediction 189 244 - -
Pral5322g00036 404 Pfam Homeobox associated leucine zipper 299 333 IPR003106 GO:0006355|GO:0043565
Pral5322g00036 404 SMART halz 299 344 IPR003106 GO:0006355|GO:0043565
Pral5322g00036 404 SMART HOX_1 241 303 IPR001356 GO:0003677
Pral5322g00036 404 MobiDBLite consensus disorder prediction 43 109 - -
Pral5322g00036 404 SUPERFAMILY Homeodomain-like 227 300 IPR009057 -
Pral5322g00036 404 MobiDBLite consensus disorder prediction 357 384 - -
Pral5322g00036 404 MobiDBLite consensus disorder prediction 84 109 - -
Pral5322g00036 404 Gene3D - 247 297 - -
Pral5322g00036 404 Coils Coil 56 76 - -
Pral5322g00036 404 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 93 377 - -
Pral5322g00036 404 Pfam Homeodomain 243 297 IPR001356 GO:0003677
Pral5322g00036 404 ProSiteProfiles 'Homeobox' domain profile. 239 299 IPR001356 GO:0003677
Pral5322g00036 404 ProSitePatterns 'Homeobox' domain signature. 274 297 IPR017970 GO:0000981|GO:0006355
Pral5322g00036 404 MobiDBLite consensus disorder prediction 52 83 - -
Pral5322g00036 404 MobiDBLite consensus disorder prediction 220 244 - -
Pral5322g00036 404 Coils Coil 305 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5322g00036 Pral-Chr5322 244604 246787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5322g00036 200 391 Homeobox Transcription Factor Family AT4G37790 56.633 3.31e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5322g00036 Homeodomain 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5322g00036 K09338 - gmx:100778742 303.908