Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5322g00005 ATGAGTGTTATGTATAGTCCCAGTGTTCTGAATTACTCAGACGGGGAGCTTAGGAGAAACCCAGAAATGGATTCAATTCCCCACTTGAATTCTGGATTAATGAGGTACAGTTCTGCTCCAAGCTCATTTCTGGCAAGCCTTGTTCAGAATAGCCACGGCTGTGTGAATGAGGGAGCCTCTAGAAGCGTAGATCATCATGATCATCATCACAATCCATCTTCAAGTTCAGAAATGGAAGCGATGTTGGCCAAGTTGGTTTCTTCATCATCAAACAATGAATGGATGAAGCAGGAAGAAGCAGGGGACTCTGTTTCTGAGAGACCCAGTGGGTATAATTCTAATTATGGTCCTCAGATGATTTACCAATCTCAGACTCAGCAAGCTGTTCAGGGCTTGCCAAACGGGTCTGTAGGTTCTTCTGGGAATGATTTTGATGGCTCATTCAATTCCACTGAGTCCAAAATAAGGTCAAATAATCTCCTTAGGCAGAAAAGCTCCCCTGCTGGACTGTTCAACAATTTCTCAGTTGAAAATGGTTTTGCGACATGGAGAGATGTGGGAAGCTTTAGTGCCTGTGATCATGTCTCAAATGGCCAAGCTTCTACATCAGTTAGTGGCTTAAATGATAATACTCTAGCCTTCTCATCTAAACCATCTTCTTGTTCAAAACACTTGCCTGATATAGCAGAAGATGGAAATGAAACCCTAGAAGAAGCAACTTGTGTGGATGGCAGAAGAAATCTGACAAATGACAGAAATGGCAATAACACTGAATGTTACATTCCCAGTTTTACAAGTGACTTCTGGGATGGTCCTTCATTCAATGACACCAAAACAGCCAGTGACAATGATGAACTCATGTTTTCTACTACTTCAAATGGTTTTGAAACTCAGAATGTTGGTTTGACTCATCATTTGAGTCTGCCTAGTTCTTCTACAAAGTCAAAGATGGATGCCGTTGAGAAGTTTCTTCAAGTTCAGGGATCTGTTCCTTGTAAGATTCGAGCTAAAAGAGGTTTCGCCACCCACCCACGGAGCATTGCAGAGAGGGTAAGAAGAACACGAATCAGTGAAAGAATAAAGAAATTGCAAGATCTCTTCCCAAAATCTGAAAAGCAAACAAGCACAGCAGATATGTTGGATTTAGCAGTTGATTATATTAAAGATTTGCAGAAACAAGTTAAGATGCTCACAGATACTAAAGCAAAGTGCAAGTGTTCAAGTAACCAGATGCAGAACTCAGTTCCTTGTAGCTAG 1257 0.4121 MSVMYSPSVLNYSDGELRRNPEMDSIPHLNSGLMRYSSAPSSFLASLVQNSHGCVNEGASRSVDHHDHHHNPSSSSEMEAMLAKLVSSSSNNEWMKQEEAGDSVSERPSGYNSNYGPQMIYQSQTQQAVQGLPNGSVGSSGNDFDGSFNSTESKIRSNNLLRQKSSPAGLFNNFSVENGFATWRDVGSFSACDHVSNGQASTSVSGLNDNTLAFSSKPSSCSKHLPDIAEDGNETLEEATCVDGRRNLTNDRNGNNTECYIPSFTSDFWDGPSFNDTKTASDNDELMFSTTSNGFETQNVGLTHHLSLPSSSTKSKMDAVEKFLQVQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVDYIKDLQKQVKMLTDTKAKCKCSSNQMQNSVPCS 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5322g00005 418 MobiDBLite consensus disorder prediction 59 74 - -
Pral5322g00005 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 406 IPR036638 GO:0046983
Pral5322g00005 418 Pfam Helix-loop-helix DNA-binding domain 346 391 IPR011598 GO:0046983
Pral5322g00005 418 SMART finulus 346 396 IPR011598 GO:0046983
Pral5322g00005 418 Gene3D - 342 414 IPR036638 GO:0046983
Pral5322g00005 418 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 411 - -
Pral5322g00005 418 MobiDBLite consensus disorder prediction 75 98 - -
Pral5322g00005 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 390 IPR011598 GO:0046983
Pral5322g00005 418 FunFam Transcription factor bHLH130 family 341 410 - -
Pral5322g00005 418 MobiDBLite consensus disorder prediction 57 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5322g00005 Pral-Chr5322 41410 44177 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5322g00005 23 396 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.509 3.56e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5322g00005 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5322g00005 - - gmx:100795896 436.417