Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral531g00004 ATGGATCTACCGCCGTCCTCTCCTGCCGGACGCAGCTTGAAGCGCGAGCGTGAACAAGAATTCTTGGTAGATTTTTTCAGCGACATTGTGGAGCAAGTCACTATTCTCAACTCCAGCTTATCATCGTCCCAGTCGGATCGCCTCGCGGCCAAGCGTGCTGTTGATGTTCTCTTTGCAGTCGGACAGAATGAGGCAATTCTGAGTAGTATGGTGGACTGCGGAGCTGTTCCTGCTTTGTTAAAACATCTGGAAGCACCTGAACCAGTTAGAGAAGGTGATGGTGTTCCCAAGCCTTACGAGCATGAGGTGGAAAGGGGGTGTCTCTTGGTCCTTGAGAGTCTTGCTTTTAAACCAGAGCATCAACAACTCATTGTCGATGCCGGAGCTTTGTCCTATCTTATGGATTTGCTAAAGAGGTACAAGACCCATGGCAATTCAAGGGCACTTACTCGCCTTATAAGGAGAGCAGCTGATCTCATCGCAAGCCTTGTGGAGGAAAATGATAGCATTAAAACCCGTGTTAGGATGGAAGGTGCTATCCCTCCTCTAGTTGAATTGCTTGAATTTGATAATGTAAAGGTACAAAGGGCAGCTGCAGGAGCCTTACGTAATCTTGCATTTAAAAATGATGAGAACACAAAACAGATTGTCAGATGCAATGCACTGCCTACTCTTGTACTAATGCTTGGATCAAAGGATGCTGCCACACGTTTTGAAGCAGTTGGCTTGATTAGAAATCTGGTCAACTCTTCTCCAGACATAAAGAGGGAAGTTCTTCTAGCTGGTGCTCTACGACCTATAATTGGATTGCTTAGGTCTGACTGGTGGGAGAGTCAGAGAGAAGCAGCTCTTTTAATTGGTATATTTGCTGGGACAGATTCTGATTGCAAGGCTCATATTGCTCAAAGAGGGGCTATCCAGCCACTGATTGACATGCTTAAGTCCCCATATGCACAGCTTTGGAAAGCATCAGCATTTGCACTTGGGAGACTGGCCCAGGACGCACACAATCAAGCTGGTATTGCTTATAATGGAGGTATAGAGCTTCTACTCGACCTTCTTTGCTCCAACGATGATGGACCTCTCCAACGTAATGCAGCCTTTGCTCTGTATGGTTTTGCTGATAATGAGGAGAATGTTGCGGATATTGTTAAGGTTGGTGGTGTTCAAAAACTACAGGATGGAGATTTCATAGATGGACCTGCTAAAGAGTATGTAGGGAAGACAATGAAAAGATTAGAGGAGAAAATGCATGGACAAGTGCTGAAACAGCTGATGTATCTTATGCGTTTTGGAGAAAAGGTTGTTCAAAGACACGTGGCTTTAGCTCTTGCTCATCTATGTGCCCCTGATGATGGGAAATTTATTTTTGTTGACAACAATGGACTCGAATTCCTACTGGATCTTCTAGAATCTGCAAATATTAAACAGAATCGCGAGGCTTCAATGGCACTTCACTCATTGGCTGTCAGAACCACATCTATCTCTCCCTTTGATGCTACTCCTCCATCCTCGGCTTCCCAGGTATACTTAGGCGAGCAGTATATAAACAATCCTACATTTTCTGATATCATCTTTTTAGTTGAAGGCAAACAGTTCTATGCTCACCGAATTTGTCTACTTGCTTCCTCTGATGCGTTTCGAGCAATGCTTGATGGTTTTTATTGGGAAAAGGAAGCCAAAGAGATACAGATTCCTAACGTTAAATGGGATGTCTTTGAAGTGATGATGAGATTTATTTACACGGGAAATGTAGATGTCAACTTGGATATTGCTCAAGATCTCCTAAGAGTCGCTGATCAGTATCTTCTGGATGGTCTCAAGCGATCTTGTGAGTGTGCACTTGCTCAGGATATTTCGGTAGAAAATGTCTCTCTTATGTACGAGTTATCGGAGTCGTTTAATGCTATGGCATTGAGGCATGCATGTATATTCTTTTTGTTGGCTCAATTTGACAAACTGAGCGCCGAACCATGGTATAGGTACCTCATCTGTCGCATTGTCCCAGATATACGTGAATTATTCGAAAGTTTACTCACCAAGCCTACTAGCGGAATATGGGATAAGAGTCCTAGTTGA 2079 0.4382 MDLPPSSPAGRSLKREREQEFLVDFFSDIVEQVTILNSSLSSSQSDRLAAKRAVDVLFAVGQNEAILSSMVDCGAVPALLKHLEAPEPVREGDGVPKPYEHEVERGCLLVLESLAFKPEHQQLIVDAGALSYLMDLLKRYKTHGNSRALTRLIRRAADLIASLVEENDSIKTRVRMEGAIPPLVELLEFDNVKVQRAAAGALRNLAFKNDENTKQIVRCNALPTLVLMLGSKDAATRFEAVGLIRNLVNSSPDIKREVLLAGALRPIIGLLRSDWWESQREAALLIGIFAGTDSDCKAHIAQRGAIQPLIDMLKSPYAQLWKASAFALGRLAQDAHNQAGIAYNGGIELLLDLLCSNDDGPLQRNAAFALYGFADNEENVADIVKVGGVQKLQDGDFIDGPAKEYVGKTMKRLEEKMHGQVLKQLMYLMRFGEKVVQRHVALALAHLCAPDDGKFIFVDNNGLEFLLDLLESANIKQNREASMALHSLAVRTTSISPFDATPPSSASQVYLGEQYINNPTFSDIIFLVEGKQFYAHRICLLASSDAFRAMLDGFYWEKEAKEIQIPNVKWDVFEVMMRFIYTGNVDVNLDIAQDLLRVADQYLLDGLKRSCECALAQDISVENVSLMYELSESFNAMALRHACIFFLLAQFDKLSAEPWYRYLICRIVPDIRELFESLLTKPTSGIWDKSPS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral531g00004 692 Pfam BTB/POZ domain 515 617 IPR000210 GO:0005515
Pral531g00004 692 Pfam Armadillo/beta-catenin-like repeat 209 247 IPR000225 GO:0005515
Pral531g00004 692 Pfam Armadillo/beta-catenin-like repeat 174 206 IPR000225 GO:0005515
Pral531g00004 692 Gene3D - 143 274 IPR011989 -
Pral531g00004 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 346 IPR000225 GO:0005515
Pral531g00004 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 345 388 IPR000225 GO:0005515
Pral531g00004 692 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 24 683 IPR044282 -
Pral531g00004 692 Gene3D - 21 142 IPR011989 -
Pral531g00004 692 Gene3D - 275 493 IPR011989 -
Pral531g00004 692 SMART arm_5 117 165 IPR000225 GO:0005515
Pral531g00004 692 SMART arm_5 209 249 IPR000225 GO:0005515
Pral531g00004 692 SMART arm_5 63 116 IPR000225 GO:0005515
Pral531g00004 692 SMART arm_5 293 333 IPR000225 GO:0005515
Pral531g00004 692 SMART arm_5 450 490 IPR000225 GO:0005515
Pral531g00004 692 SMART arm_5 334 375 IPR000225 GO:0005515
Pral531g00004 692 SMART arm_5 251 291 IPR000225 GO:0005515
Pral531g00004 692 SMART arm_5 167 207 IPR000225 GO:0005515
Pral531g00004 692 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 178 212 IPR000225 GO:0005515
Pral531g00004 692 Gene3D Potassium Channel Kv1.1; Chain A 494 648 IPR011333 -
Pral531g00004 692 SUPERFAMILY ARM repeat 153 489 IPR016024 -
Pral531g00004 692 ProSiteProfiles BTB domain profile. 522 589 IPR000210 GO:0005515
Pral531g00004 692 SMART BTB_4 522 619 IPR000210 GO:0005515
Pral531g00004 692 SUPERFAMILY POZ domain 514 616 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral531g00004 Pral-Chr531 53789 58877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral531g00004 264 492 U-box Gene Family AT2G23140 24.051 3.57e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pral531g00004 BTB 1.1e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral531g00004 - - sind:105165291 879.396