Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5319g00004 ATGAGATTGGGAACTTGCTATCTCATCTTGCTACTTGGGGAAAGCCAGGACATGGAAACTTCACTTGTAAACTCCTTCTTCTCTGTATGCTTGTTGCTAACTCTTAGGTTTTCAGAGTCTGTAGGAAGCTGGAATAGCTGTCCAGAACCTGAAACAACATGCGGAAACCTTCCTGTTCGGTTTCCTTTCCGAGTAATAGGACGCCAACCAGCACAATGCGGCTATCCTGGGTTTGATTTACAATGTTCTTCTGCTAATCACGTTGTTCTTGAGCTTCCTAGATCAGTCCATTTCAATGTCAAACATATTGATTACAAATCTCAAACCATTCAACTATATGCTTCTGGTTGCCTTTCAAGGCATTTACGTAACCTCACTCTTCTTCCTTCCCCTTTCAAGTTCACCGACCGGAATCTTGATGACTTTACAATTTTCAATTGCTCGTCACCAAGAGATGGAGTACTTATTTCAACTTGCCTCAGCAGCTCTACTTACCAAGTATATGCCGTTTCATCCTATAGTCTGATTCGTGGACTTCCCTTGTTATTTTGCAGCAAAATATTTAACATTTCATTTGTTCCGCCTGAAATTTTTAATGTTGAGAACACTCTTCATTTGATGTGGTCTAATCCATTGTGCAAACATTGTGAATCAAATGGAGCAAGATGTGGATTCAACAATGGTAATAGAGGCAATGATACTACATGTTTCAAGGATCCTCACCGTGGTTCATCAAACAAATTTGTAATTACAGGATCAATCATGGGTTCACTTCTATTGGTGATTATTTTAGTTGCAATTCTTTATATCCGCAACTCTTACAAATCACGGAAAGAAAACCAAGCCATAATTGAGAAGTTTTTGAAAGATTATAGAGCTCTCAAGCCCACAAGATATTCTTATGCTGAAATCAAGAGGATTACCAATAAATTTGAAGTCAAGTTAGGGGAAGGACCTTACGGTAGTGTGTTCAAAGGAAACATTTCATCTGATTTCAAAGTTGCAGTGAAGATCCTCAATAATTCTAAAGGAAATGGGGAAGAGTTCATCACTGAAGTTGGAACAATAGGCAAAATCCATCATGTCAACATTATTCGCTTAATGGGCTTTTGTGCTAACGGCTTTAGAAGAGCGCTGGTTTATGAATACTTTCCATATGGTTCATTACAAAATTTCATAAATTCATCAGATAATAGGCAAAACTTTATTGGTTGGAAAAAGCTCCATGGTATAGCTTTAGGTATAGCCAAAGGAATTGAGTACCTTCATCAAGGGTGTAAGCAACGCATACTTCATTTTGACATCAAACCTGGTAATGTTTTATTGGATGATGACTTCACTCCAAAAATATGTGATTCCGGGTTGGTCAAGTTGTGCTTCAAAGATCGAAGTATAGTGTCAATGACTCATGTTAGAGGAACATTGGGTTACATAGCTCCAGAAGTTTTCTCACGAAATTTTGGAAATGTGTCTCATAAAGTAGATGTTTATAGTTTTGGGATGTTGCTGCTTGAATTAACAGGGGGAAGAAGGATCACCCATGACACAAAAGAAAATGCTCCCCACATTTACTATCCCGAATGGATTTATAATATTTTAGAAGAAAGGGAGGATGTAAGGATTCATATTGAGGAAGAAGGTGATGCTAAAATTGCAGAAAAGTTGGGAATAGTGGGATTGTGGTGCACTCAGTGGCATCCTGTGGATCGACCATCAATGCAAGTAGTGGTTCAAATGTTAGAAAGAGAAGGAGATAAATTACCAATACCTCCGAATCCTTTTAATATGGAAGGCATGTCAACAAGAAAAAGGGCCAGCGTGCCCACAAGAAGTCAGATGCAAGGATTAGAAATAATCCAAGAAGTAGATTGA 1872 0.3835 MRLGTCYLILLLGESQDMETSLVNSFFSVCLLLTLRFSESVGSWNSCPEPETTCGNLPVRFPFRVIGRQPAQCGYPGFDLQCSSANHVVLELPRSVHFNVKHIDYKSQTIQLYASGCLSRHLRNLTLLPSPFKFTDRNLDDFTIFNCSSPRDGVLISTCLSSSTYQVYAVSSYSLIRGLPLLFCSKIFNISFVPPEIFNVENTLHLMWSNPLCKHCESNGARCGFNNGNRGNDTTCFKDPHRGSSNKFVITGSIMGSLLLVIILVAILYIRNSYKSRKENQAIIEKFLKDYRALKPTRYSYAEIKRITNKFEVKLGEGPYGSVFKGNISSDFKVAVKILNNSKGNGEEFITEVGTIGKIHHVNIIRLMGFCANGFRRALVYEYFPYGSLQNFINSSDNRQNFIGWKKLHGIALGIAKGIEYLHQGCKQRILHFDIKPGNVLLDDDFTPKICDSGLVKLCFKDRSIVSMTHVRGTLGYIAPEVFSRNFGNVSHKVDVYSFGMLLLELTGGRRITHDTKENAPHIYYPEWIYNILEEREDVRIHIEEEGDAKIAEKLGIVGLWCTQWHPVDRPSMQVVVQMLEREGDKLPIPPNPFNMEGMSTRKRASVPTRSQMQGLEIIQEVD 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5319g00004 623 SMART serkin_6 309 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5319g00004 623 Pfam Wall-associated receptor kinase galacturonan-binding 47 113 IPR025287 GO:0030247
Pral5319g00004 623 MobiDBLite consensus disorder prediction 587 611 - -
Pral5319g00004 623 PANTHER RUST RESISTANCE KINASE LR10-RELATED 280 600 IPR045874 GO:0004672
Pral5319g00004 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Pral5319g00004 623 ProSiteProfiles Protein kinase domain profile. 309 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5319g00004 623 Pfam Protein kinase domain 312 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5319g00004 623 FunFam PR5-like receptor kinase 384 591 - -
Pral5319g00004 623 SUPERFAMILY Protein kinase-like (PK-like) 293 581 IPR011009 -
Pral5319g00004 623 Gene3D Transferase(Phosphotransferase) domain 1 385 587 - -
Pral5319g00004 623 Gene3D Phosphorylase Kinase; domain 1 284 383 - -
Pral5319g00004 623 FunFam serine/threonine-protein kinase PBS1-like 276 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5319g00004 Pral-Chr5319 24879 27292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5319g00004 50 593 Receptor kinase-like Gene Family AT1G66910 36.542 1.44e-106 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pral5319g00004 Pkinase 7.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5319g00004 - - qsa:O6P43_019907 697.582