Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5318g00002 ATGGCAGATGAAACGCATAATGGTCTTGCGGCAATCATGGCAACTGAAAAACGTCATGATATGAAGGAGGGCAGTGAAGAAATTCCTACGTCTGATCCTTTGTTTAAGGAGAAAAAGAACATTTTGATGCAAGATCTCGATGGTGGCTGCTCCACTGAGGAGCTCCGACTGCAGAATCATGCAGCTAACTCTTCTAAGGTGTGTGACACAAGGCAGAAACCTCGAAAAAAGCTCGTCAGAATTATTGTAGCTGACCCTGATGCTACTGATACTGACTCTTGCACCAGTGATGATGCGGAAAAACGTGTAACAGCACGAGGAGGGGAGAGACAAGTAACACAGATCTGCATTGATATTCCCTCAGATTCTCCTTCCTCTTTTGTCTCTACTCCTTTTCCTACCAAGGAAGAGTTCCACCTTCAGAAACCAAAGAAATCATTCAACAGTGATGACTCAGTTGGTGGCCACAAGAAGTACAGGGGTGTTCGCCGGAGGAAATGGGGTCGGTGGGCTGCTGAAATCCGAGACCCGGTGAGCCGGAAAAGGCTCTGGCTTGGAACCTTTGACACTGCGGAGGAAGCTGCATCAGAGTATGACAAGGCTGCTGTGAAGCTGAGGGGTCTTAACGCCATTACCAACTTCCCTCAGTCTGTTAAGGAGGTGAAGCCTGCTACCATCCGTGACAGCTCAAGCATCGATAGTTTTACCTCGTTCGGTGCGCTGGCATCCCCAACCTCTGTGCTGTCTTAG 750 0.4867 MADETHNGLAAIMATEKRHDMKEGSEEIPTSDPLFKEKKNILMQDLDGGCSTEELRLQNHAANSSKVCDTRQKPRKKLVRIIVADPDATDTDSCTSDDAEKRVTARGGERQVTQICIDIPSDSPSSFVSTPFPTKEEFHLQKPKKSFNSDDSVGGHKKYRGVRRRKWGRWAAEIRDPVSRKRLWLGTFDTAEEAASEYDKAAVKLRGLNAITNFPQSVKEVKPATIRDSSSIDSFTSFGALASPTSVLS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5318g00002 249 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 75 247 - -
Pral5318g00002 249 MobiDBLite consensus disorder prediction 1 36 - -
Pral5318g00002 249 Pfam AP2 domain 158 207 IPR001471 GO:0003700|GO:0006355
Pral5318g00002 249 CDD AP2 157 217 IPR001471 GO:0003700|GO:0006355
Pral5318g00002 249 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Pral5318g00002 249 PRINTS Ethylene responsive element binding protein signature 181 197 IPR001471 GO:0003700|GO:0006355
Pral5318g00002 249 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Pral5318g00002 249 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
Pral5318g00002 249 Gene3D AP2/ERF domain 157 217 IPR036955 GO:0003700|GO:0006355
Pral5318g00002 249 FunFam Ethylene-responsive transcription factor 2 157 216 - -
Pral5318g00002 249 SUPERFAMILY DNA-binding domain 158 217 IPR016177 GO:0003677
Pral5318g00002 249 MobiDBLite consensus disorder prediction 13 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5318g00002 Pral-Chr5318 7337 10939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5318g00002 77 249 AP2-EREBP Transcription Factor Family AT4G27950 43.316 1.91e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5318g00002 AP2 5.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5318g00002 K13434 - gmx:100800489 145.591