Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5314g00006 ATGGCAGATGCAGGAAGCCCCGACTTCTGGGATATCATAAGCAGCCCGGAAGAGATGGGAATGTTCAACCTGTTTATCGATGGTGTAGCTTATGAAAGACTCCGTCTTTACTCTCCAGATCCTAGAATTTCTGGGCAGGAGCGACATTACATGGATTTTGTTGTGTCTACAAGAGGAAACAATTTGACAGTAACTGTTGCTCCTGATAGAACGACAAATAGTACAAATGCTACCATGAACGGGCTGGAGATAATGAAGATCATTGATGAAGTTAGAGCCTTGGATGGAAGGGCTTGCGTGGAATTAATAGTTGGATCTATCTTGGGTGCTGCAGCCTTCCTAGTTCTCATTGTAGTAACTTTATGTTACTTGAAAACTCACAGGTCAAGGGCAGGCTCCAGAGGCACAACCAGATCATGTAGGCTTTTCACTTTGCAAGAAATCAGTGAAGCAACTAACAACTTTGAGGAGGGTCTGCTTCTTGGAGAGGGTGGTTTTGGCAAAGTCTACAAAGGAATGATGAATAACGGGAAAGAAGTAGCCATCAAAGTGGCTAATCCCCAATCAGGACAGGGTCTTCGTGAATTTGAGAATGAGATTGAATTGCTATCCAAGCTCTCTCATCAGAATCTTGTCTCTTTGATAGGATACTGTAATGAAGACTCTCAAATGATTCTAGTCTACGAATTCTTGGCGAATGGATCTTTGAGTGGTCATCTCCATGGGACAAACTTTCTTCCTTTATCATGGAAGCGAAGACTGGAAATATGTGTTGGGACTGCGAAGGCTCTTCATTACCTACACACAGGGGCTCCTCGAAGTGTAATCCATCGCGATGTTAAGACAGCAAATATTCTCTTGAATGACAATTTTGACCCAAAAATTGCTGATTTTGGAATCTCAAGAAAAGGTCCTCCTCTGGATAAGAGTCATGTAACAACCTTGGTAAAGGGCAGCTTTGGTTATATTGATCCTGAGTATTTCAGAACAAAATATCTCACAGAGAAATCAGATGTTTTCTCATTTGGAATGGTTCTGATGGAAGTTATGTGTGGCAAGTCTGCTTTAGACGACACTCGTCCAACAGAGCATCTTAATCTGGCAAGATGGGCATTAAGCTGCCAAGAAAATGGCACCTTTCATGAGATTATAGACCCATATTTGATCGGTAAAGTGAACTTAGATTCTCTACACAAAGTACGTGAGTTGGCTTGGAAGTGCTTGGAGGAGAGTCGCATAAATAGACCATCAATGGGGTATGTACTGTGTGAGCTTGAAGATGCTCTTCACCTTGAGTTGGCTTTACCAATTCAGCAAATTTCTGCGGATTGTGCCATCAATATGGTTGCAGAGAATGGAATCAAGGATGAAGAGGAACAAGACTTCCCTGCAAATCTCGTTCTCTCAGTTTAA 1413 0.4225 MADAGSPDFWDIISSPEEMGMFNLFIDGVAYERLRLYSPDPRISGQERHYMDFVVSTRGNNLTVTVAPDRTTNSTNATMNGLEIMKIIDEVRALDGRACVELIVGSILGAAAFLVLIVVTLCYLKTHRSRAGSRGTTRSCRLFTLQEISEATNNFEEGLLLGEGGFGKVYKGMMNNGKEVAIKVANPQSGQGLREFENEIELLSKLSHQNLVSLIGYCNEDSQMILVYEFLANGSLSGHLHGTNFLPLSWKRRLEICVGTAKALHYLHTGAPRSVIHRDVKTANILLNDNFDPKIADFGISRKGPPLDKSHVTTLVKGSFGYIDPEYFRTKYLTEKSDVFSFGMVLMEVMCGKSALDDTRPTEHLNLARWALSCQENGTFHEIIDPYLIGKVNLDSLHKVRELAWKCLEESRINRPSMGYVLCELEDALHLELALPIQQISADCAINMVAENGIKDEEEQDFPANLVLSV 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5314g00006 470 ProSiteProfiles Protein kinase domain profile. 155 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5314g00006 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Pral5314g00006 470 CDD STKc_IRAK 168 426 - -
Pral5314g00006 470 FunFam Wall-associated receptor kinase 2 231 446 - -
Pral5314g00006 470 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 98 427 - -
Pral5314g00006 470 SUPERFAMILY Protein kinase-like (PK-like) 134 425 IPR011009 -
Pral5314g00006 470 FunFam receptor-like protein kinase FERONIA 122 230 - -
Pral5314g00006 470 ProSitePatterns Protein kinases ATP-binding region signature. 161 183 IPR017441 GO:0005524
Pral5314g00006 470 Gene3D Transferase(Phosphotransferase) domain 1 231 439 - -
Pral5314g00006 470 Gene3D Phosphorylase Kinase; domain 1 121 230 - -
Pral5314g00006 470 Pfam Protein tyrosine and serine/threonine kinase 160 367 IPR001245 GO:0004672|GO:0006468
Pral5314g00006 470 SMART serkin_6 155 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5314g00006 Pral-Chr5314 59154 60665 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5314g00006 9 451 Receptor kinase-like Gene Family AT3G46290 43.532 1.01e-125 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Pral5314g00006 PK_Tyr_Ser-Thr 7.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5314g00006 - - pcin:129313301 624.78