Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5311g00039 ATGTGCCTTCAAAGAAATGTCTTGCAAATCAAATTTCCACAACCAAATTCTGATATTGAAAAGGGCAAAACCAGGAAGATTCTTGGAATTGTTTTCCCAGGTTCAATTCTATTGGCGTTGGTGTTCATTGCGTGCTTTTACATATATCTCTATTTCAAAGAAAAAGGAGATGATCAAGTGAGATTGGAAAAGTTTTTGGAGAATTACAAGGTACATAAACCTACTAGATTTTCTTATGCTGACCTGAAAAGAATCACAAATCATTTCAAGTATAAACTAGGTGAAGGAGCTCATGGAGAAGTGTTTAAAGGTAAGTTATCTACCGAAATCCAAGTGGCAGTGAAAGTAATCAATAATTCAGATAGCGATGGGCAAGAGTTCATCAATGAAGTGGGGACTATGGGTAAAATTCATCACATCAACGTTGTTCGTTTGCTAGGCTTTTGTGCTGATGGTTTTCATCGTGCTCTTGTTTATGACTTCTTTCCAAATGGTTCCCTTCAGAAGTTCATAACTTCGCCAGACAACAAGGAAAATTTCCTTGGATGGTTGAAATTGCAACAGTTAGCCCTTTCCATAGCTCAAGGGATTGAATATCTTCATCAAGGTTGTGATTACCGAATTCTTCACTTTGACATCAATCCTCGTAATGTGCTGTTAGATCACAATTTTACTCCAAAAATTTCTGATTTTGGCCTAGCTAAATTGTGTTCTAAAAATCAAAGTACAATATCAATAACAGCAGCTAAAGGAACTTTGGGTTATATTGCCCCTGAAATATTCTCTCGAAACTTTGGAAAGGTGTCATATAAAGCAGATATTTACAGTTATGGAATACTGCTACTAGAAATGGTTGGTGGAAGGAAAAATGTTGACACTAATCCAGAAACCTTACAAGTGTTATGCCCAGATTGGATCCATAGTTTGATGGAAGGAGGTGATATAAGTATCCATATGGAAGATGAAGATGACATTAAGATTGCGAGAAAACTAGCAATTGTGGGACTTTGGTGCATTCAATGGCATCCAGCAAATCGTCCTTCCATGAAGACCATTATTCAAATGCTAGACGGAGAGGTTGATAAATTAAAGGTGCCTCCTACTCCATTTGACTTTGCCACTTCAACTAATATGAGTACCATCATTCCTACGAGACATTTGAATTTAGAGTTAGAAGTGGTTCATGAATTCGAATAA 1197 0.3676 MCLQRNVLQIKFPQPNSDIEKGKTRKILGIVFPGSILLALVFIACFYIYLYFKEKGDDQVRLEKFLENYKVHKPTRFSYADLKRITNHFKYKLGEGAHGEVFKGKLSTEIQVAVKVINNSDSDGQEFINEVGTMGKIHHINVVRLLGFCADGFHRALVYDFFPNGSLQKFITSPDNKENFLGWLKLQQLALSIAQGIEYLHQGCDYRILHFDINPRNVLLDHNFTPKISDFGLAKLCSKNQSTISITAAKGTLGYIAPEIFSRNFGKVSYKADIYSYGILLLEMVGGRKNVDTNPETLQVLCPDWIHSLMEGGDISIHMEDEDDIKIARKLAIVGLWCIQWHPANRPSMKTIIQMLDGEVDKLKVPPTPFDFATSTNMSTIIPTRHLNLELEVVHEFE 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5311g00039 398 Gene3D Transferase(Phosphotransferase) domain 1 162 365 - -
Pral5311g00039 398 Pfam Protein tyrosine and serine/threonine kinase 89 356 IPR001245 GO:0004672|GO:0006468
Pral5311g00039 398 ProSiteProfiles Protein kinase domain profile. 87 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5311g00039 398 FunFam PR5-like receptor kinase 162 367 - -
Pral5311g00039 398 PIRSF TyrPK_CSF1-R 164 288 - -
Pral5311g00039 398 PIRSF TyrPK_CSF1-R 336 380 - -
Pral5311g00039 398 PIRSF TyrPK_CSF1-R 2 182 - -
Pral5311g00039 398 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Pral5311g00039 398 SUPERFAMILY Protein kinase-like (PK-like) 69 356 IPR011009 -
Pral5311g00039 398 FunFam serine/threonine-protein kinase PBS1-like 56 161 - -
Pral5311g00039 398 Gene3D Phosphorylase Kinase; domain 1 61 161 - -
Pral5311g00039 398 PANTHER RUST RESISTANCE KINASE LR10-RELATED 61 375 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5311g00039 Pral-Chr5311 336512 337856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5311g00039 1 369 Receptor kinase-like Gene Family AT1G66910 40.420 9.48e-98 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pral5311g00039 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5311g00039 - - tpra:123893290 544.273