Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5311g00034 ATGGGGAGAGGGAAAATAGGCTTGACCGGGTTATGGGGTTTAATGTTGTTCACTTGTGTGTATCTAACACCCCAAACAATGGGTTCAAAGAATGAGAGCAAAACCTGTAATCCGTCTCATTGCGGCATCATCACAAACATCTCATATCCATTTCGTCTCCGAGGCGACCCGCCCAACTGTGGCCTCGGGCCTTACGAGTTAGCCTGTGAAAACAATGTCGCTCTGCTTCGTCTCAATCCTGCAGGGACAGCAACATACCAAGTACTGCGAATCAACTATGACAACTACACAATCCGAGTCAAAGACCCTGGCATTCGGGAGGACGATTGCTCCTCCCTCCCTCGCTATACCTTATCCCTATCTAATTTCACCTACACTTCTAATTCTTCCTTGGAATATGATAAGGATAATCCCTATGATGCCTTTCTGGGCGGTTCCCCTGCATTCCACCACGTCATTTACCTGAACTGTAGTGATCCGGTGAGGGACGCTGCGGGCTACGTGGATACGGCTCCCTGCGTGGATTGGGGAGCCAAAGGAGAAGGAGGAGGCCATGTTTATGTCGTGGCTGGCAGAGACTTAGAGGCCCAGAGGCTGAAACCTGAGTGTCGTGTGAAATCAGTGGCCGCCATTGCTTTAGATTGGAGTTCATTCCTGGACCAGAGAAGCTACTTCTACGCTGATATTCACAGAGTACTTTCCTATGGTTTCGAGATTTCGTGGTGGCGACTAGGTTGTTCTGATCTTTCTTGTAGAGTCGACTCCGAGGGGTGCTGGCTCCGCAATAACCAGGTCTATTGCGAAGTTTACGCGGAGCTGGCCAATTGCCAACCGCATGTATTACCTTTTCATCTCTTTTGTGGAATGGCCCAATATCTCAGCAAGCGCGTAAAAGGTTTGTCATCTTCGAAGCGTATTAATCAGTTTGCAAAGGAATATTTAAGGCAAAAGAGTCTTGACTCCAAGCCTGGTGATAAAGTTGATGGACATTTCATTTCATTCACCTTAGGAAAAATCACAGCATATGTTACGCCAGCAATTATTCTAAGATTTCTGGTTGGTATAGTATTTCTGTTCATCTTGCTGATTTACACATATCGGAGAAGACACTTGTCAGGCTATGGAAGCATTGAAGATTTCATACAACTTCATAACCTTCATCCAATAAGGTACTCCTACAAGCAACTGAAGACTATGACAAAAGGTTTCAAGACTAAGTTAGGTGAAGGAGGCTTTGGCACTGTCTACAAAGGGAAGCTAAGGAGTGGACCTGATGTCGCAATTAAAATGTTGGGTAATAAATCCAAAGCTTCTTGTCAAGACTTCATCAATGAGGTGGCAACTGTCGGAAGGATACGCCATTTCAATGTGGTACGTCTTGTTGGCTTTTGTGTGGAAGGAACTAAACGTGCTCTTATCTATGAATTCATGTCCAATGGATCTTTGGATAAACATATATTTTTCCAAGAAGGAAGTGTCTCCTTAAGTTATCGCAAAATCTATGAGATATCTTTAGGAGTGACTCGTGGCATTGCTTATCTTCATCATGGCTGTGACATGCAAATATTGCATTTTGATATCAAGCCTCATAATATTCTTCTTGATGACAATTTGACCCCAAAAATTTCAGATTTTGGACTGGCAAAATTATATGTTATTGATGATAGCATTCCCACTTTGACTGCAGCAAGAGGGACAATAGGATACATAGCTCCTGAATTATTCTATAAGAATATTGGAAGAGTATCTCATAAATCTGATGTTTACAGTTTTGGAATGCTTTTAATGGAAATGGCAAGCCAGAGAAGAAACTTGAATCCACATGCAGAGCATTCAAGCCAATTATATTTTCCATCATGGATTTATGACCAATTTGATGAAGAGAAAGATATAGAAATAATGGATGATATGACAGAAGAGGAAAAGGCTTTGGCAAAGAAAATGTTCATAGTAGCATTATGGTGCATTCAGTTTAATCCTGCCGATCGCCCTTCAATGAACAAAGTCATAGAGATGTTGGAAGTAGATGATGTTTCAAGTCTTGAAATGCCTCCAAAACCTTCTTTGTATCCTGCAAATGATAGACCCAACTGTGACGAAACATCATCTTTATCCTTCACGTGTTCTCATTCCAATCTATGTGAGGATGCAAGCGACATGCAGGAATAA 2169 0.4232 MGRGKIGLTGLWGLMLFTCVYLTPQTMGSKNESKTCNPSHCGIITNISYPFRLRGDPPNCGLGPYELACENNVALLRLNPAGTATYQVLRINYDNYTIRVKDPGIREDDCSSLPRYTLSLSNFTYTSNSSLEYDKDNPYDAFLGGSPAFHHVIYLNCSDPVRDAAGYVDTAPCVDWGAKGEGGGHVYVVAGRDLEAQRLKPECRVKSVAAIALDWSSFLDQRSYFYADIHRVLSYGFEISWWRLGCSDLSCRVDSEGCWLRNNQVYCEVYAELANCQPHVLPFHLFCGMAQYLSKRVKGLSSSKRINQFAKEYLRQKSLDSKPGDKVDGHFISFTLGKITAYVTPAIILRFLVGIVFLFILLIYTYRRRHLSGYGSIEDFIQLHNLHPIRYSYKQLKTMTKGFKTKLGEGGFGTVYKGKLRSGPDVAIKMLGNKSKASCQDFINEVATVGRIRHFNVVRLVGFCVEGTKRALIYEFMSNGSLDKHIFFQEGSVSLSYRKIYEISLGVTRGIAYLHHGCDMQILHFDIKPHNILLDDNLTPKISDFGLAKLYVIDDSIPTLTAARGTIGYIAPELFYKNIGRVSHKSDVYSFGMLLMEMASQRRNLNPHAEHSSQLYFPSWIYDQFDEEKDIEIMDDMTEEEKALAKKMFIVALWCIQFNPADRPSMNKVIEMLEVDDVSSLEMPPKPSLYPANDRPNCDETSSLSFTCSHSNLCEDASDMQE 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5311g00034 722 Gene3D Transferase(Phosphotransferase) domain 1 477 682 - -
Pral5311g00034 722 ProSiteProfiles Protein kinase domain profile. 401 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5311g00034 722 SUPERFAMILY Protein kinase-like (PK-like) 385 675 IPR011009 -
Pral5311g00034 722 SMART serkin_6 401 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5311g00034 722 CDD STKc_IRAK 407 674 - -
Pral5311g00034 722 FunFam PR5-like receptor kinase 477 685 - -
Pral5311g00034 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 522 534 IPR008271 GO:0004672|GO:0006468
Pral5311g00034 722 Pfam Wall-associated receptor kinase galacturonan-binding 36 102 IPR025287 GO:0030247
Pral5311g00034 722 Pfam Protein kinase domain 404 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5311g00034 722 PANTHER RUST RESISTANCE KINASE LR10-RELATED 376 693 IPR045874 GO:0004672
Pral5311g00034 722 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Pral5311g00034 722 Gene3D Phosphorylase Kinase; domain 1 385 476 - -
Pral5311g00034 722 FunFam serine/threonine-protein kinase PBS1-like 375 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5311g00034 Pral-Chr5311 268404 278865 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5311g00034 20 697 Receptor kinase-like Gene Family AT5G38260 34.577 6.60e-105 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pral5311g00034 Pkinase 6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5311g00034 - - pcin:129321062 862.062