Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5311g00023 ATGGAGTCTAGAATTACCATTTCTGATTCCAACGAGATCAGCAATAATGGAAGCGGAGTATGTTGTATAGCCAGCACTTCCCGAACCCATTTAACTCCGGAAGCTTCACCTCCTTTAGATGTTGCAGCCCTAAGCCGCCTCTCCGACAACCTCGCATCAATCTTCGAAACCTCGGAGTCCGACGCCTTCTTTGCCGACGCCAGAATCGTTCTCGGTGACGGTAGGGAAGTTCCGGTTCACCGCTGCATTCTGGCGGCGAGAAGCCCTTTCTTCAAGAGGGTGTTCTCTGGGAAGGAGAGGAATGGAGTGAAATTGGAATTGAAGGAATTGGCTAAGGATTACGAGGCTGGTTTCGATGCGATTGTGGGTGTTGTGAGTTATTTGTATAGTGGGAAACTAAGGTCACCGCCCAAGGGTGTTCGTGTGTGTGTGGACGATGATTGCTCCCATCTTGGCTGTCGACCTGCTGTGGAATTCATGGCTGAACTGCTCTATGCCTCTTCAGCGTTTGAAATATCTGAGTTGGTTGATCTTTATCAGAACTATCTGCTACGAATTCTTGACAAGGCAGCAGCAGATGAAATTTTGCTGGTTCTTTCTGTTGCAAGTATATGTGGTAAATCCTGCGAGACACTTCTAGCAAGGTGTACTGAGTTGATTGTTAAATCTGATGTTGATGTCATTACTCTTGAAAAAGCTCTGCCACAGCAAATTATGAAACAAATTATTGATAAACGTATAGAACTAGGCTCAGAAGACAAGTCCAACAACATCTGTTTGCCAGATAAATTTGTGAAGAGAATACATAGGGCTCTTGATTCTGATGATGTTGAGTTAGTGAGGTTGCTCTTGAGAGAGGGACATACTAATCTAGATGATGCTTATGCCCTTCACTATGCTGTTGCATACTGTGATGCCAAGACTACTACTGAGCTTCTTGACCTCGGGCTTGCTGATGTTAATTGTAAAAATCCAAGGGGATATAGTGTGCTCCATGTGGCTGCAATGAGGAAGGAGCCTAAGATTATAGTGTCCCTTTTGACCAAGGGAGCTCAGCCTTCTGATCTCACTTTGGATGGTAGGAAAGCCCTTCAAATTTCTAAGCGCCTCACCAAGGCAGTGCATTATTATGGTGCTGAGGAAGGCAAAGCATCTTCTAGGGACAGATTGTGCATAGAGATATTAGAACAAGCTGAGAGAAGAGAGCCTGTACTTGGGGAGGCGTCTTTTTCTCTTGCTATGGCAGGGGACGATTTGCGCATGAAACTGTTATACCTTGAAAACAGAGTTGGACTGGCGAAGCTATTGTTTCCAATGGAAGCGAAGGTTGTATTGGACATTGTTCAAATTGATGGAACCTGTCCATTTTCAGATATATCTCAAAATGTGAGTACTAATACTCAGAGGACAGCAGTGGATTTGAATGAGGCACCTTTCAAAATAAAGGAGGAGCACCTAACAAGGATGAGAGTACTCTCTAAATCTGTTGAACTAGGCAAACGATTCTTTCCTCGTTGTTCGGAAGTTCTGAACAAGATCATGGATACTAATAACCTATCACAGATTGCATGTATGGGCAATGACACTCCAGAAGAAAGACAAGCCAAGAGAAGAAGGTACGTGCTGCTCCAAGAAGTTCTGAGTAAGGCTTTCATGGAGGACAAGCAGGAGTTTGATAAGTCTACAGTCTCATCATCTTCTTCTTCACCATCAATAGGCATGGTTAGGAGAAACCCATGA 1740 0.4425 MESRITISDSNEISNNGSGVCCIASTSRTHLTPEASPPLDVAALSRLSDNLASIFETSESDAFFADARIVLGDGREVPVHRCILAARSPFFKRVFSGKERNGVKLELKELAKDYEAGFDAIVGVVSYLYSGKLRSPPKGVRVCVDDDCSHLGCRPAVEFMAELLYASSAFEISELVDLYQNYLLRILDKAAADEILLVLSVASICGKSCETLLARCTELIVKSDVDVITLEKALPQQIMKQIIDKRIELGSEDKSNNICLPDKFVKRIHRALDSDDVELVRLLLREGHTNLDDAYALHYAVAYCDAKTTTELLDLGLADVNCKNPRGYSVLHVAAMRKEPKIIVSLLTKGAQPSDLTLDGRKALQISKRLTKAVHYYGAEEGKASSRDRLCIEILEQAERREPVLGEASFSLAMAGDDLRMKLLYLENRVGLAKLLFPMEAKVVLDIVQIDGTCPFSDISQNVSTNTQRTAVDLNEAPFKIKEEHLTRMRVLSKSVELGKRFFPRCSEVLNKIMDTNNLSQIACMGNDTPEERQAKRRRYVLLQEVLSKAFMEDKQEFDKSTVSSSSSSPSIGMVRRNP 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5311g00023 579 SMART BTB_4 65 187 IPR000210 GO:0005515
Pral5311g00023 579 SUPERFAMILY POZ domain 45 185 IPR011333 -
Pral5311g00023 579 CDD BTB_POZ_NPR_plant 46 187 - -
Pral5311g00023 579 ProSiteProfiles Ankyrin repeat profile. 326 358 IPR002110 GO:0005515
Pral5311g00023 579 SUPERFAMILY Ankyrin repeat 267 368 IPR036770 -
Pral5311g00023 579 Pfam NPR1/NIM1 like defence protein C terminal 368 569 IPR021094 -
Pral5311g00023 579 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 236 389 - -
Pral5311g00023 579 SMART ANK_2a 326 355 IPR002110 GO:0005515
Pral5311g00023 579 SMART ANK_2a 263 291 IPR002110 GO:0005515
Pral5311g00023 579 SMART ANK_2a 292 322 IPR002110 GO:0005515
Pral5311g00023 579 MobiDBLite consensus disorder prediction 555 579 - -
Pral5311g00023 579 Gene3D Potassium Channel Kv1.1; Chain A 40 222 IPR011333 -
Pral5311g00023 579 ProSiteProfiles BTB domain profile. 65 137 IPR000210 GO:0005515
Pral5311g00023 579 MobiDBLite consensus disorder prediction 561 579 - -
Pral5311g00023 579 PANTHER REGULATORY PROTEIN NPR3 5 571 IPR044292 GO:0009862|GO:2000022|GO:2000031
Pral5311g00023 579 Pfam Ankyrin repeats (3 copies) 269 353 IPR002110 GO:0005515
Pral5311g00023 579 Gene3D - 235 479 IPR036770 -
Pral5311g00023 579 Pfam BTB/POZ domain 59 184 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5311g00023 Pral-Chr5311 164290 168255 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pral5311g00023 NPR1_like_C 2.2e-82 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5311g00023 K14508 - tcc:18588372 780.4