Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5311g00022 ATGGAGGAAGCTCAATTGGAGCCTTCAAAACCCTCTGAAATTTTGACGCGTTTTCCTCATTACCGTCGATCACATTTGAAGAGTGGGACTTATCATACCCTTGTTCGTATCCTATCCCACTGCAACAATGAGTGCAGTCTACCTGGCACAATAGGAAATCATGCTGCTTCTCCAGAGCTAAAAAATCATACCAATGGCATCGATAGATTGGGGCAAGAAAACAGGGAAAGGGAGCCTCAGAACTTGCAATTTTCTGGTATTGATCTTATGAATCTCAAGCATCCTGTATGCCACCGGGGAAAACAGGTTCTTGAGAACTCTAGTGGTAGGGAGTTTATAATGGGAGTAGAGGAAGATGTAGGCTCTGCTGGGAGGCAGGATATGATGATTTGGGAAAGTGAAAGTGTTGAGGCCTTGTCTATGAGAACTAATGGTTTGAATAAGGAACAGAAGAAAATAGAAGAGTCGAATCAGATAGCGAAAGGAACTGAAAACCTTGTTGACAATGGCTCAATTCCTTTGAACCTGAGATTAGGTGAAAACCAGAATGGAAGCAGTGAAGTTGACTTGATCGATTACCGAGTGGAGCATGCTGAATTTAGGAGATCCAATATCAACACATCTGGAACTGAAAGCCAGTTATGTATAGAAGGAGAATTTAATCAAAATATCTCCAAAGGCTTTGATGGATCTTTAATTGCTAACAATTCAACATCTGAAACAAAGGAAACCTCCGTACCTGAAATTAGTACTTCAAGTACAGGGCATGAGACACAACAAAAAGAAATGGAATTAGTGGAACCACTTTGTGATGCAATGGTTTCTCTGCCTATTATTGAAGAAGGTGAGTTTGAGAAGGAAGAACGTGGTCAAAGGGTTCATGTAGCAACACAGCTTTCTCTAGATGATGGTATGGAATATAATGACCTGTTGAATTTTAGTATTGAGCTCGAGAGACTACAAAAGGAAATGGAATTGGTGAAACCTGTTTCTGCTGCAGTTGTTTCTTTTCGTACTGCTGAAGAGGGTAAGTTTGAGAAGGAAGAACAACGTGGTCAAAAGGCATGTGAGGCTATTCAATTTTCTGTGGATCAGGGTACGAATAATGAAGAATCAAATTCAAGTGTAAAGCATAAGAAACAAAAAACGGAAATGGACTCAGCAAAACCAGCTTGTGCTGCAATGGTTTCTCTTCCTACTACCAAAGAGGGTAAGTTTGACAAGGAAGAACAACACGGTCAAAAGGCTTCTGAAGCAATGCATGTTTCTGTAGATCAGGCTATGAGTAGTGAAGCATTGATTTCAAGTATAAATCCCAAGAGACAACAAAAGGAAATGGAACTGGTGAAACCTGTTTCTGCTGCAATTATTCCTCTTCCTACTACTGAAGAGGGTGAGTTTAAGAAGGAAGAACAACAGGGACAAAGGGTTCCTGAAGCAATGCAATTTTCTATGGATGAGGGTGTGAATAATGAAGCATCAAATTCACATATAAAGCATGAGAAACAACAAAAGGAAATGAACTCATCAAAACCAGTTTGTGCTGCAATTGTTTCTCTTCCTACTACCAAAGAGGGTGAGCTGGAGAAGGAAGTACAACATGGTCAGAAGGTTCCTGAAGCAATGCACATATCTGTAGATCATGGTATGGATATTGAATCATTGATTTTAACAAGAAAGCCTAAAAGCCAACATAATCCAATGGAATTGGCGAAACCTTGCTGCACTGCAATCGTTTCCCTTCCTGATATTGAAGAGGATGAACTTGAGAAGGAAGAGCATAATTGTAGTGATGGTTCCAAATCCACTAAGACATATGTAAGGAAGAGTAAGAAGAGGGATTTGGGCCTCTCGGACATAGAGCCATCAGGTAGAAAGGTCCCTGAAGCAATGGACTTATCTGTTAATCAGGGTATCAATGGTGAAACATTGAATGTGGGCAAATATAGTGAAGAGATGTGGTTCATGGACATTGATATCTTGGATGCTAAACATGAAATGCAGCATGAAAAAGAGCAGCCAGAAAAAATAACTTGTGTAAATGGTGCAATATTTTCCGATCATCCAGATAAGAAAGAAGGCATTGAAGAGGGAGAAATTTCAGGTGACTTTAGAATGGATGAGAATTCAATTGATACGTCTTCTGCAGATTCCTTGATGATAGAACAGAGGGAACATGATGTACAAAAGCCCAAACATGTTTTTGAAAATATAGTATTTCCTTTTAACATACAGAAAGAAGAAAAAGAAAAACAATATGAATCAACTCAAGATAACAGTAGACTAATGGAACCTAGGAAAAGTGATAAAAATGGGCTTCCAAATGGAGTTGACTTTGGAATCTCTCGGGAAATTGTTGATTATGGAGATTTAGTGGAGCATGGTTCTATATCGGTTACTGGAAAAAGTGAAGACGGGGGAATTAAAGGTGTTGTTGGCTTGCCACCCACTTTGGCTAACAAAGAAGTCTCGCCCGAAGAAGAAGCCACTGATGATCATCAAAACACATCTGCAAAAGCTGGCATCAGTTGTAAGAAAAAGCGTGGTCCTGTTACTGAGGAAAGGAAGGCCAAAAAGAAGGAAAAGAAAAGAAAGAAGCGGGCAGAAAAGAACAGAAAACTTGGGGTTAAAAGGTTGAAGCTGCAGCCAGTACAGAAACCAAAAACTATCACATATTGCCGACATTATCTCAAGGGAAGGTGCCATGAGGGTGACAAGTGCAAGTTCTCACATGACATAGTGCCTCTGACAAAATCAAAGCCGTGCTGTCACTTTGCTCGTCACTCTTGCATGAAAGGTGATGACTGTCCATTTGATCATGAGCTTTCCAAGTATCCTTGTAGCAATTTTGTGAGTAAAGGATCTTGCAGCAGAGGGAATGCTTGTATGTTTTCACACCAGATGCCAACCAAACAAGATGTTGCTACATCTTCAAATGATAGCAAAGCTGAGTTGGAGCCTAAACTATTAGGAAATGCAAACTTAAGCAAGCCGCCTAATATCAGCAGCAGCAGCGCTTCTCAGCAAAAACAGATCTCTGATTCAAAAGGAATTCAAACTCACTTGAATTCAGAAAAAGAGGTGACAGACACTGTAAAGAAACCACCGACAATGGCACCTAAAGGAATTAGTTTCATCAATTTTTCAAAATCATCATCTCCAAAACAAGGAATGGTAACGCCAGACAAGGGAAATTCTGTTCAAATTGGGACCCGTTCTAATCAAAGTGCATCGGGCACAGCTTTAAACTCGATGAATCCTGGGAAAACGCCAGTAGGGGTACCTAAAGGAATTAATTTCCTTTCATTTGGAAAAGGTCGTATTTCCGATTTCAAAAGTACTGTTTGCTCCTTTCTGAATAAGGAAAGTGGTATCAAGTTGTGTCAGAAAGGAAGTTTAGGTACGCCTGAACAAGCATCTCTAGAGAAGGATGATGGCAGTAAAATTGGCATTGGGCTGCAGACTGCTGTGTGCTCAAATGAGACTTTAAAGGAAAATCAATGTGTAGCGGGGAAAATGGATTTGGGTTTCCAAGGAAAAGCTTCAATACATCGTTATAGTAATGGTGTTCAATTTAGCTCAACCTCTCATCATGATCACAGTCTTAGTAGATCAGTGCAAGAGGGAACAAAGGCATATACTCCTCAGACTTCAACTCTGACCTCATCTATGTTTCCAACTTCTCCATTTATTTCAGGTCAATCTTCAGAACGGTTAGCACCTGGACATCATAAGCACGTATATAACTCTGCTCAAAGGGCACTGTTATCAACTCTATCATTTGCAGCAGAGCACGAGTCCAATATTAAGCTAAAGTCCCCTTTTGGTGCATCAGCTGTGAAATTAGAGATGAACAAGGATGTATAG 3867 0.4019 MEEAQLEPSKPSEILTRFPHYRRSHLKSGTYHTLVRILSHCNNECSLPGTIGNHAASPELKNHTNGIDRLGQENREREPQNLQFSGIDLMNLKHPVCHRGKQVLENSSGREFIMGVEEDVGSAGRQDMMIWESESVEALSMRTNGLNKEQKKIEESNQIAKGTENLVDNGSIPLNLRLGENQNGSSEVDLIDYRVEHAEFRRSNINTSGTESQLCIEGEFNQNISKGFDGSLIANNSTSETKETSVPEISTSSTGHETQQKEMELVEPLCDAMVSLPIIEEGEFEKEERGQRVHVATQLSLDDGMEYNDLLNFSIELERLQKEMELVKPVSAAVVSFRTAEEGKFEKEEQRGQKACEAIQFSVDQGTNNEESNSSVKHKKQKTEMDSAKPACAAMVSLPTTKEGKFDKEEQHGQKASEAMHVSVDQAMSSEALISSINPKRQQKEMELVKPVSAAIIPLPTTEEGEFKKEEQQGQRVPEAMQFSMDEGVNNEASNSHIKHEKQQKEMNSSKPVCAAIVSLPTTKEGELEKEVQHGQKVPEAMHISVDHGMDIESLILTRKPKSQHNPMELAKPCCTAIVSLPDIEEDELEKEEHNCSDGSKSTKTYVRKSKKRDLGLSDIEPSGRKVPEAMDLSVNQGINGETLNVGKYSEEMWFMDIDILDAKHEMQHEKEQPEKITCVNGAIFSDHPDKKEGIEEGEISGDFRMDENSIDTSSADSLMIEQREHDVQKPKHVFENIVFPFNIQKEEKEKQYESTQDNSRLMEPRKSDKNGLPNGVDFGISREIVDYGDLVEHGSISVTGKSEDGGIKGVVGLPPTLANKEVSPEEEATDDHQNTSAKAGISCKKKRGPVTEERKAKKKEKKRKKRAEKNRKLGVKRLKLQPVQKPKTITYCRHYLKGRCHEGDKCKFSHDIVPLTKSKPCCHFARHSCMKGDDCPFDHELSKYPCSNFVSKGSCSRGNACMFSHQMPTKQDVATSSNDSKAELEPKLLGNANLSKPPNISSSSASQQKQISDSKGIQTHLNSEKEVTDTVKKPPTMAPKGISFINFSKSSSPKQGMVTPDKGNSVQIGTRSNQSASGTALNSMNPGKTPVGVPKGINFLSFGKGRISDFKSTVCSFLNKESGIKLCQKGSLGTPEQASLEKDDGSKIGIGLQTAVCSNETLKENQCVAGKMDLGFQGKASIHRYSNGVQFSSTSHHDHSLSRSVQEGTKAYTPQTSTLTSSMFPTSPFISGQSSERLAPGHHKHVYNSAQRALLSTLSFAAEHESNIKLKSPFGASAVKLEMNKDV 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5311g00022 1288 MobiDBLite consensus disorder prediction 995 1019 - -
Pral5311g00022 1288 SMART c3hfinal6 888 913 IPR000571 GO:0046872
Pral5311g00022 1288 SMART c3hfinal6 944 968 IPR000571 GO:0046872
Pral5311g00022 1288 SMART c3hfinal6 916 942 IPR000571 GO:0046872
Pral5311g00022 1288 Pfam CCCH-type zinc finger 893 912 IPR041367 -
Pral5311g00022 1288 Gene3D - 918 982 - -
Pral5311g00022 1288 MobiDBLite consensus disorder prediction 858 874 - -
Pral5311g00022 1288 MobiDBLite consensus disorder prediction 748 768 - -
Pral5311g00022 1288 FunFam C3H-type transcription factor 845 916 - -
Pral5311g00022 1288 SUPERFAMILY CCCH zinc finger 887 912 IPR036855 GO:0046872
Pral5311g00022 1288 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 522 1280 IPR045124 GO:0003723|GO:0045892
Pral5311g00022 1288 MobiDBLite consensus disorder prediction 991 1090 - -
Pral5311g00022 1288 MobiDBLite consensus disorder prediction 815 874 - -
Pral5311g00022 1288 ProSiteProfiles Zinc finger C3H1-type profile. 887 914 IPR000571 GO:0046872
Pral5311g00022 1288 MobiDBLite consensus disorder prediction 1044 1087 - -
Pral5311g00022 1288 Coils Coil 851 871 - -
Pral5311g00022 1288 MobiDBLite consensus disorder prediction 748 775 - -
Pral5311g00022 1288 MobiDBLite consensus disorder prediction 237 259 - -
Pral5311g00022 1288 ProSiteProfiles Zinc finger C3H1-type profile. 946 969 IPR000571 GO:0046872
Pral5311g00022 1288 MobiDBLite consensus disorder prediction 363 390 - -
Pral5311g00022 1288 Coils Coil 146 166 - -
Pral5311g00022 1288 Gene3D - 845 917 - -
Pral5311g00022 1288 ProSiteProfiles Zinc finger C3H1-type profile. 916 943 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5311g00022 Pral-Chr5311 150168 156726 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5311g00022 zf-CCCH_4 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5311g00022 - - pcin:129320444 1392.1