Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5311g00021 ATGGAGGAAGCTCAATTGGAGCCTTCAAAACCCTCTGAAATTTTGACGCGTTTTCCTCATTACCGTCGATCACATTTGAAGAGTGGGACTTATCATACCCTTGTTCGTATCCTATCCCACTGCAACAATGAGTGCAGTCTACCTGGCACAATAGGAAATCATGCTGCTTCTCCAGAGCTAAAAAATCATACCAATGGCATCGATAGATTGGGGCAAGAAAACAGGGAAAGGGAGCCTCAGAACTTGCAATTTTCTGGTATTGATCTTATGAATCTCAAGCATCCTGTATGCCACCGGGGAAAACAGGTTCTTGAGAACTCTAGTGGTAGGGAGTTTATAATGGGAGTAGAGGAAGATGTAGGCTCTGCTGGGAGGCAGGATATGATGATTTGGGAAAGTGAAAGTGTTGAGGCCTTGTCTATGAGAACTAATGGTTTGAATAAGGAACAGAAGAAAATAGAAGAGTCGAATCAGATAGCGAAAGGAACTGAAAACCTTGTTGACAATGGCTCAATTCCTTTGAACCTGAGATTAGGTGAAAACCAGAATGGAAGCAGTGAAGTTGACTTGATCGATTACCGAGTGGAGCATGCTGAATTTAGGAGATCCAATATCAACACATCTGGAACTGAAAGCCAGTTATGTATAGAAGGAGAATTTAATCAAAATATCTCCAAAGGCTTTGATGGATCTTTAATTGCTAACAATTCAACATCTGAAACAAAGGAAACCTCCGTACCTGAAATTAGTACTTCAAGTACAGGGCATGAGACACAACAAAAAGAAATGGAATTAGTGGAACCACTTTGTGATGCAATGGTTTCTCTGCCTATTATTGAAGAAGGTGAGTTTGAGAAGGAAGAACGTGGTCAAAGGGTTCATGTAGCAACACAGCTTTCTCTAGATGATGGTATGGAATATAATGACCTGTTGAATTTTAGTATTGAGCTCGAGAGACTACAAAAGGAAATGGAATTGGTGAAACCTGTTTCTGCTGCAGTTGTTTCTTTTCGTACTGCTGAAGAGGGTAAGTTTGAGAAGGAAGAACAACGTGGTCAAAAGGCATGTGAGGCTATTCAATTTTCTGTGGATCAGGGTACGAATAATGAAGAATCAAATTCAAGTGTAAAGCATAAGAAACAAAAAACGGAAATGGACTCAGCAAAACCAGCTTGTGCTGCAATGGTTTCTCTTCCTACTACCAAAGAGGGTAAGTTTGACAAGGAAGAACAACACGGTCAAAAGGCTTCTGAAGCAATGCATGTTTCTGTAGATCAGGCTATGAGTAGTGAAGCATTGATTTCAAGTATAAATCCCAAGAGACAACAAAAGGAAATGGAACTGGTGAAACCTGTTTCTGCTGCAATTATTCCTCTTCCTACTACTGAAGAGGGTGAGTTTAAGAAGGAAGAACAACAGGGACAAAGGGTTCCTGAAGCAATGCAATTTTCTATGGATGAGGGTGTGAATAATGAAGCATCAAATTCACATATAAAGCATGAGAAACAACAAAAGGAAATGAACTCATCAAAACCAGTTTGTGCTGCAATTGTTTCTCTTCCTACTACCAAAGAGGGTGAGCTGGAGAAGGAAGTACAACATGGTCAGAAGGTTCCTGAAGCAATGCACATATCTGTAGATCATGGTATGGATATTGAATCATTGATTTTAACAAGAAAGCCTAAAAGCCAACATAATCCAATGGAATTGGCGAAACCTTGCTGCACTGCAATCGTTTCCCTTCCTGATATTGAAGAGGATGAACTTGAGAAGGAAGAGCATAATTGTAGTGATGGTTCCAAATCCACTAAGACATATGTAAGGAAGAGTAAGAAGAGGGATTTGGGCCTCTCGGACATAGAGCCATCAGGTAGAAAGGTCCCTGAAGCAATGGACTTATCTGTTAATCAGGGTATCAATGGTGAAACATTGAATGTGGGCAAATATAGTGAAGAGATGTGGTTCATGGACATTGATATCTTGGATGCTAAACATGAAATGCAGCATGAAAAAGAGCAGCCAGAAAAAATAACTTGTGTAAATGGTGCAATATTTTCCGATCATCCAGATAAGAAAGAAGGCATTGAAGAGGGAGAAATTTCAGGTGACTTTAGAATGGATGAGAATTCAATTGATACGTCTTCTGCAGATTCCTTGATGATAGAACAGAGGGAACATGATGTACAAAAGCCCAAACATGTTTTTGAAAATATAGTATTTCCTTTTAACATACAGAAAGAAGAAAAAGAAAAACAATATGAATCAACTCAAGATAACAGTAGACTAATGGAACCTAGGAAAAGTGATAAAAATGGGCTTCCAAATGGAGTTGACTTTGGAATCTCTCGGGAAATTGTTGATTATGGAGATTTAGTGGAGCATGGTTCTATATCGGTTACTGGAAAAAGTGAAGACGGGGGAATTAAAGGTGTTGTTGGCTTGCCACCCACTTTGGCTAACAAAGAAGTCTCGCCCGAAGAAGAAGCCACTGATGATCATCAAAACACATCTGCACAGAAAGCTGGCATCAGTTGTAAGAAAAAGCGTGGTCCTGTTACTGAGGAAAGGAAGGCCAAAAAGAAGGAAAAGAAAAGAAAGAAGCGGGCAGAAAAGAACAGAAAACTTGGGGTTAAAAGGTTGAAGCTGCAGCCAGTACAGAAACCAAAAACTATCACATATTGCCGACATTATCTCAAGGGAAGGTGCCATGAGGGTGACAAGTGCAAGTTCTCACATGACATAGTGCCTCTGACAAAATCAAAGCCGTGCTGTCACTTTGCTCGTCACTCTTGCATGAAAGGTGATGACTGTCCATTTGATCATGAGCTTTCCAAGTATCCTTGTAGCAATTTTGTGAGTAAAGGATCTTGCAGCAGAGGGAATGCTTGTATGTTTTCACACCAGATGCCAACCAAACAAGATGTTGCTACATCTTCAAATGATAGCAAAGCTGAGTTGGAGCCTAAACTATTAGGAAATGCAAACTTAAGCAAGCCGCCTAATATCAGCAGCAGCAGCGCTTCTCAGCAAAAACAGATCTCTGATTCAAAAGGAATTCAAACTCACTTGAATTCAGAAAAAGAGGTGACAGACACTGTAAAGAAACCACCGACAATGGCACCTAAAGGAATTAGTTTCATCAATTTTTCAAAATCATCATCTCCAAAACAAGGAATGGTAACGCCAGACAAGGGAAATTCTGTTCAAATTGGGACCCGTTCTAATCAAAGTGCATCGGGCACAGCTTTAAACTCGATGAATCCTGGGAAAACGCCAGTAGGGGTACCTAAAGGAATTAATTTCCTTTCATTTGGAAAAGGTCGTATTTCCGATTTCAAAAGTACTGTTTGCTCCTTTCTGAATAAGGAAAGTGGTATCAAGTTGTGTCAGAAAGGAAGTTTAGGTACGCCTGAACAAGCATCTCTAGAGAAGGATGATGGCAGTAAAATTGGCATTGGGCTGCAGACTGCTGTGTGCTCAAATGAGACTTTAAAGGAAAATCAATGTGTAGCGGGGAAAATGGATTTGGGTTTCCAAGGAAAAGCTTCAATACATCGTTATAGTAATGGTGTTCAATTTAGCTCAACCTCTCATCATGATCACAGTCTTAGTAGATCAGTGCAAGAGGGAACAAAGGCATATACTCCTCAGACTTCAACTCTGACCTCATCTATGTTTCCAACTTCTCCATTTATTTCAGGTCAATCTTCAGAACGGTTAGCACCTGGACATCATAAGCACGTATATAACTCTGCTCAAAGGGCACTGTTATCAACTCTATCATTTGCAGCAGAGCACGAGTCCAATATTAAGCTAAAGTCCCCTTTTGGTGCATCAGCTGTGAAATTAGAGATGAACAAGGATGTATAG 3870 0.4021 MEEAQLEPSKPSEILTRFPHYRRSHLKSGTYHTLVRILSHCNNECSLPGTIGNHAASPELKNHTNGIDRLGQENREREPQNLQFSGIDLMNLKHPVCHRGKQVLENSSGREFIMGVEEDVGSAGRQDMMIWESESVEALSMRTNGLNKEQKKIEESNQIAKGTENLVDNGSIPLNLRLGENQNGSSEVDLIDYRVEHAEFRRSNINTSGTESQLCIEGEFNQNISKGFDGSLIANNSTSETKETSVPEISTSSTGHETQQKEMELVEPLCDAMVSLPIIEEGEFEKEERGQRVHVATQLSLDDGMEYNDLLNFSIELERLQKEMELVKPVSAAVVSFRTAEEGKFEKEEQRGQKACEAIQFSVDQGTNNEESNSSVKHKKQKTEMDSAKPACAAMVSLPTTKEGKFDKEEQHGQKASEAMHVSVDQAMSSEALISSINPKRQQKEMELVKPVSAAIIPLPTTEEGEFKKEEQQGQRVPEAMQFSMDEGVNNEASNSHIKHEKQQKEMNSSKPVCAAIVSLPTTKEGELEKEVQHGQKVPEAMHISVDHGMDIESLILTRKPKSQHNPMELAKPCCTAIVSLPDIEEDELEKEEHNCSDGSKSTKTYVRKSKKRDLGLSDIEPSGRKVPEAMDLSVNQGINGETLNVGKYSEEMWFMDIDILDAKHEMQHEKEQPEKITCVNGAIFSDHPDKKEGIEEGEISGDFRMDENSIDTSSADSLMIEQREHDVQKPKHVFENIVFPFNIQKEEKEKQYESTQDNSRLMEPRKSDKNGLPNGVDFGISREIVDYGDLVEHGSISVTGKSEDGGIKGVVGLPPTLANKEVSPEEEATDDHQNTSAQKAGISCKKKRGPVTEERKAKKKEKKRKKRAEKNRKLGVKRLKLQPVQKPKTITYCRHYLKGRCHEGDKCKFSHDIVPLTKSKPCCHFARHSCMKGDDCPFDHELSKYPCSNFVSKGSCSRGNACMFSHQMPTKQDVATSSNDSKAELEPKLLGNANLSKPPNISSSSASQQKQISDSKGIQTHLNSEKEVTDTVKKPPTMAPKGISFINFSKSSSPKQGMVTPDKGNSVQIGTRSNQSASGTALNSMNPGKTPVGVPKGINFLSFGKGRISDFKSTVCSFLNKESGIKLCQKGSLGTPEQASLEKDDGSKIGIGLQTAVCSNETLKENQCVAGKMDLGFQGKASIHRYSNGVQFSSTSHHDHSLSRSVQEGTKAYTPQTSTLTSSMFPTSPFISGQSSERLAPGHHKHVYNSAQRALLSTLSFAAEHESNIKLKSPFGASAVKLEMNKDV 1289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5311g00021 1289 MobiDBLite consensus disorder prediction 362 390 - -
Pral5311g00021 1289 Gene3D - 843 918 - -
Pral5311g00021 1289 MobiDBLite consensus disorder prediction 992 1091 - -
Pral5311g00021 1289 MobiDBLite consensus disorder prediction 748 768 - -
Pral5311g00021 1289 FunFam C3H-type transcription factor 846 917 - -
Pral5311g00021 1289 SUPERFAMILY CCCH zinc finger 888 913 IPR036855 GO:0046872
Pral5311g00021 1289 Coils Coil 852 872 - -
Pral5311g00021 1289 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 566 1281 IPR045124 GO:0003723|GO:0045892
Pral5311g00021 1289 SMART c3hfinal6 889 914 IPR000571 GO:0046872
Pral5311g00021 1289 SMART c3hfinal6 917 943 IPR000571 GO:0046872
Pral5311g00021 1289 SMART c3hfinal6 945 969 IPR000571 GO:0046872
Pral5311g00021 1289 ProSiteProfiles Zinc finger C3H1-type profile. 888 915 IPR000571 GO:0046872
Pral5311g00021 1289 ProSiteProfiles Zinc finger C3H1-type profile. 947 970 IPR000571 GO:0046872
Pral5311g00021 1289 MobiDBLite consensus disorder prediction 237 259 - -
Pral5311g00021 1289 MobiDBLite consensus disorder prediction 859 877 - -
Pral5311g00021 1289 MobiDBLite consensus disorder prediction 748 777 - -
Pral5311g00021 1289 MobiDBLite consensus disorder prediction 802 877 - -
Pral5311g00021 1289 MobiDBLite consensus disorder prediction 1045 1088 - -
Pral5311g00021 1289 MobiDBLite consensus disorder prediction 996 1020 - -
Pral5311g00021 1289 Pfam CCCH-type zinc finger 894 913 IPR041367 -
Pral5311g00021 1289 Gene3D - 919 983 - -
Pral5311g00021 1289 ProSiteProfiles Zinc finger C3H1-type profile. 917 944 IPR000571 GO:0046872
Pral5311g00021 1289 Coils Coil 146 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5311g00021 Pral-Chr5311 150168 156726 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5311g00021 zf-CCCH_4 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5311g00021 - - pcin:129320444 1392.87