Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5311g00020 ATGGAGGAAGCTCAATTGGAGCCTTCAAAACCCTCTGAAATTTTGACGCGTTTTCCTCATTACCGTCGATCACATTTGAAGAGTGGGACTTATCATACCCTTGTTCGTATCCTATCCCACTGCAACAATGAGTGCAGTCTACCTGGCACAATAGGAAATCATGCTGCTTCTCCAGAGCTAAAAAATCATACCAATGGCATCGATAGATTGGGGCAAGAAAACAGGGAAAGGGAGCCTCAGAACTTGCAATTTTCTGGTATTGATCTTATGAATCTCAAGCATCCTGTATGCCACCGGGGAAAACAGGTTCTTGAGAACTCTAGTGGTAGGGAGTTTATAATGGGAGTAGAGGAAGATGTAGGCTCTGCTGGGAGGCAGGATATGATGATTTGGGAAAGTGAAAGTGTTGAGGCCTTGTCTATGAGAACTAATGGTTTGAATAAGGAACAGAAGAAAATAGAAGAGTCGAATCAGATAGCGAAAGGAACTGAAAACCTTGTTGACAATGGCTCAATTCCTTTGAACCTGAGATTAGGTGAAAACCAGAATGGAAGCAGTGAAGTTGACTTGATCGATTACCGAGTGGAGCATGCTGAATTTAGGAGATCCAATATCAACACATCTGGAACTGAAAGCCAGTTATGTATAGAAGGAGAATTTAATCAAAATATCTCCAAAGGCTTTGATGGATCTTTAATTGCTAACAATTCAACATCTGAAACAAAGGAAACCTCCGTACCTGAAATTAGTACTTCAAGTACAGGGCATGAGACACAACAAAAAGAAATGGAATTAGTGGAACCACTTTGTGATGCAATGGTTTCTCTGCCTATTATTGAAGAAGGTGAGTTTGAGAAGGAAGAACGTGGTCAAAGGGTTCATGTAGCAACACAGCTTTCTCTAGATGATGGTATGGAATATAATGACCTGTTGAATTTTAGTATTGAGCTCGAGAGACTACAAAAGGAAATGGAATTGGTGAAACCTGTTTCTGCTGCAGTTGTTTCTTTTCGTACTGCTGAAGAGGGTAAGTTTGAGAAGGAAGAACAACGTGGTCAAAAGGCATGTGAGGCTATTCAATTTTCTGTGGATCAGGGTACGAATAATGAAGAATCAAATTCAAGTGTAAAGCATAAGAAACAAAAAACGGAAATGGACTCAGCAAAACCAGCTTGTGCTGCAATGGTTTCTCTTCCTACTACCAAAGAGGGTAAGTTTGACAAGGAAGAACAACACGGTCAAAAGGCTTCTGAAGCAATGCATGTTTCTGTAGATCAGGCTATGAGTAGTGAAGCATTGATTTCAAGTATAAATCCCAAGAGACAACAAAAGGAAATGGAACTGGTGAAACCTGTTTCTGCTGCAATTATTCCTCTTCCTACTACTGAAGAGGGTGAGTTTAAGAAGGAAGAACAACAGGGACAAAGGGTTCCTGAAGCAATGCAATTTTCTATGGATGAGGGTGTGAATAATGAAGCATCAAATTCACATATAAAGCATGAGAAACAACAAAAGGAAATGAACTCATCAAAACCAGTTTGTGCTGCAATTGTTTCTCTTCCTACTACCAAAGAGGGTGAGCTGGAGAAGGAAGTACAACATGGTCAGAAGGTTCCTGAAGCAATGCACATATCTGTAGATCATGGTATGGATATTGAATCATTGATTTTAACAAGAAAGCCTAAAAGCCAACATAATCCAATGGAATTGGCGAAACCTTGCTGCACTGCAATCGTTTCCCTTCCTGATATTGAAGAGGATGAACTTGAGAAGGAAGAGCATAATTGTAGTGATGGTTCCAAATCCACTAAGACATATGTAAGGAAGAGTAAGAAGAGGGATTTGGGCCTCTCGGACATAGAGCCATCAGGTAGAAAGGTCCCTGAAGCAATGGACTTATCTGTTAATCAGGGTATCAATGGTGAAACATTGAATGTGGGCAAATATAGTGAAGAGATGTGGTTCATGGACATTGATATCTTGGATGCTAAACATGAAATGCAGCATGAAAAAGAGCAGCCAGAAAAAATAACTTGTGTAAATGGTGCAATATTTTCCGATCATCCAGATAAGAAAGAAGGCATTGAAGAGGGAGAAATTTCAGGTGACTTTAGAATGGATGAGAATTCAATTGATACGTCTTCTGCAGATTCCTTGATGATAGAACAGAGGGAACATGATGTACAAAAGCCCAAACATGTTTTTGAAAATATAGTATTTCCTTTTAACATACAGAAAGAAGAAAAAGAAAAACAATATGAATCAACTCAAGATAACAGTAGACTAATGGAACCTAGGAAAAGTGATAAAAATGGGCTTCCAAATGGAGTTGACTTTGGAATCTCTCGGGAAATTGTTGATTATGGAGATTTAGTGGAGCATGGTTCTATATCGGTTACTGGAAAAAGTGAAGACGGGGGAATTAAAGGTGTTGTTGGCTTGCCACCCACTTTGGCTAACAAAGAAGTCTCGCCCGAAGAAGAAGCCACTGATGATCATCAAAACACATCTGCAGTAAGGAAAGCTGGCATCAGTTGTAAGAAAAAGCGTGGTCCTGTTACTGAGGAAAGGAAGGCCAAAAAGAAGGAAAAGAAAAGAAAGAAGCGGGCAGAAAAGAACAGAAAACTTGGGGTTAAAAGGTTGAAGCTGCAGCCAGTACAGAAACCAAAAACTATCACATATTGCCGACATTATCTCAAGGGAAGGTGCCATGAGGGTGACAAGTGCAAGTTCTCACATGACATAGTGCCTCTGACAAAATCAAAGCCGTGCTGTCACTTTGCTCGTCACTCTTGCATGAAAGGTGATGACTGTCCATTTGATCATGAGCTTTCCAAGTATCCTTGTAGCAATTTTGTGAGTAAAGGATCTTGCAGCAGAGGGAATGCTTGTATGTTTTCACACCAGATGCCAACCAAACAAGATGTTGCTACATCTTCAAATGATAGCAAAGCTGAGTTGGAGCCTAAACTATTAGGAAATGCAAACTTAAGCAAGCCGCCTAATATCAGCAGCAGCAGCGCTTCTCAGCAAAAACAGATCTCTGATTCAAAAGGAATTCAAACTCACTTGAATTCAGAAAAAGAGGTGACAGACACTGTAAAGAAACCACCGACAATGGCACCTAAAGGAATTAGTTTCATCAATTTTTCAAAATCATCATCTCCAAAACAAGGAATGGTAACGCCAGACAAGGGAAATTCTGTTCAAATTGGGACCCGTTCTAATCAAAGTGCATCGGGCACAGCTTTAAACTCGATGAATCCTGGGAAAACGCCAGTAGGGGTACCTAAAGGAATTAATTTCCTTTCATTTGGAAAAGGTCGTATTTCCGATTTCAAAAGTACTGTTTGCTCCTTTCTGAATAAGGAAAGTGGTATCAAGTTGTGTCAGAAAGGAAGTTTAGGTACGCCTGAACAAGCATCTCTAGAGAAGGATGATGGCAGTAAAATTGGCATTGGGCTGCAGACTGCTGTGTGCTCAAATGAGACTTTAAAGGAAAATCAATGTGTAGCGGGGAAAATGGATTTGGGTTTCCAAGGAAAAGCTTCAATACATCGTTATAGTAATGGTGTTCAATTTAGCTCAACCTCTCATCATGATCACAGTCTTAGTAGATCAGTGCAAGAGGGAACAAAGGCATATACTCCTCAGACTTCAACTCTGACCTCATCTATGTTTCCAACTTCTCCATTTATTTCAGGTCAATCTTCAGAACGGTTAGCACCTGGACATCATAAGCACGTATATAACTCTGCTCAAAGGGCACTGTTATCAACTCTATCATTTGCAGCAGAGCACGAGTCCAATATTAAGCTAAAGTCCCCTTTTGGTGCATCAGCTGTGAAATTAGAGATGAACAAGGATGTATAG 3873 0.402 MEEAQLEPSKPSEILTRFPHYRRSHLKSGTYHTLVRILSHCNNECSLPGTIGNHAASPELKNHTNGIDRLGQENREREPQNLQFSGIDLMNLKHPVCHRGKQVLENSSGREFIMGVEEDVGSAGRQDMMIWESESVEALSMRTNGLNKEQKKIEESNQIAKGTENLVDNGSIPLNLRLGENQNGSSEVDLIDYRVEHAEFRRSNINTSGTESQLCIEGEFNQNISKGFDGSLIANNSTSETKETSVPEISTSSTGHETQQKEMELVEPLCDAMVSLPIIEEGEFEKEERGQRVHVATQLSLDDGMEYNDLLNFSIELERLQKEMELVKPVSAAVVSFRTAEEGKFEKEEQRGQKACEAIQFSVDQGTNNEESNSSVKHKKQKTEMDSAKPACAAMVSLPTTKEGKFDKEEQHGQKASEAMHVSVDQAMSSEALISSINPKRQQKEMELVKPVSAAIIPLPTTEEGEFKKEEQQGQRVPEAMQFSMDEGVNNEASNSHIKHEKQQKEMNSSKPVCAAIVSLPTTKEGELEKEVQHGQKVPEAMHISVDHGMDIESLILTRKPKSQHNPMELAKPCCTAIVSLPDIEEDELEKEEHNCSDGSKSTKTYVRKSKKRDLGLSDIEPSGRKVPEAMDLSVNQGINGETLNVGKYSEEMWFMDIDILDAKHEMQHEKEQPEKITCVNGAIFSDHPDKKEGIEEGEISGDFRMDENSIDTSSADSLMIEQREHDVQKPKHVFENIVFPFNIQKEEKEKQYESTQDNSRLMEPRKSDKNGLPNGVDFGISREIVDYGDLVEHGSISVTGKSEDGGIKGVVGLPPTLANKEVSPEEEATDDHQNTSAVRKAGISCKKKRGPVTEERKAKKKEKKRKKRAEKNRKLGVKRLKLQPVQKPKTITYCRHYLKGRCHEGDKCKFSHDIVPLTKSKPCCHFARHSCMKGDDCPFDHELSKYPCSNFVSKGSCSRGNACMFSHQMPTKQDVATSSNDSKAELEPKLLGNANLSKPPNISSSSASQQKQISDSKGIQTHLNSEKEVTDTVKKPPTMAPKGISFINFSKSSSPKQGMVTPDKGNSVQIGTRSNQSASGTALNSMNPGKTPVGVPKGINFLSFGKGRISDFKSTVCSFLNKESGIKLCQKGSLGTPEQASLEKDDGSKIGIGLQTAVCSNETLKENQCVAGKMDLGFQGKASIHRYSNGVQFSSTSHHDHSLSRSVQEGTKAYTPQTSTLTSSMFPTSPFISGQSSERLAPGHHKHVYNSAQRALLSTLSFAAEHESNIKLKSPFGASAVKLEMNKDV 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5311g00020 1290 MobiDBLite consensus disorder prediction 1046 1089 - -
Pral5311g00020 1290 Coils Coil 853 873 - -
Pral5311g00020 1290 ProSiteProfiles Zinc finger C3H1-type profile. 889 916 IPR000571 GO:0046872
Pral5311g00020 1290 MobiDBLite consensus disorder prediction 748 768 - -
Pral5311g00020 1290 SUPERFAMILY CCCH zinc finger 889 914 IPR036855 GO:0046872
Pral5311g00020 1290 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 522 1282 IPR045124 GO:0003723|GO:0045892
Pral5311g00020 1290 ProSiteProfiles Zinc finger C3H1-type profile. 948 971 IPR000571 GO:0046872
Pral5311g00020 1290 Gene3D - 920 984 - -
Pral5311g00020 1290 Gene3D - 845 919 - -
Pral5311g00020 1290 ProSiteProfiles Zinc finger C3H1-type profile. 918 945 IPR000571 GO:0046872
Pral5311g00020 1290 MobiDBLite consensus disorder prediction 816 877 - -
Pral5311g00020 1290 MobiDBLite consensus disorder prediction 997 1021 - -
Pral5311g00020 1290 SMART c3hfinal6 946 970 IPR000571 GO:0046872
Pral5311g00020 1290 SMART c3hfinal6 918 944 IPR000571 GO:0046872
Pral5311g00020 1290 SMART c3hfinal6 890 915 IPR000571 GO:0046872
Pral5311g00020 1290 MobiDBLite consensus disorder prediction 748 775 - -
Pral5311g00020 1290 MobiDBLite consensus disorder prediction 237 259 - -
Pral5311g00020 1290 MobiDBLite consensus disorder prediction 860 877 - -
Pral5311g00020 1290 MobiDBLite consensus disorder prediction 363 390 - -
Pral5311g00020 1290 Coils Coil 146 166 - -
Pral5311g00020 1290 MobiDBLite consensus disorder prediction 993 1092 - -
Pral5311g00020 1290 FunFam C3H-type transcription factor 847 918 - -
Pral5311g00020 1290 Pfam CCCH-type zinc finger 895 914 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5311g00020 Pral-Chr5311 150168 156726 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5311g00020 zf-CCCH_4 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5311g00020 - - pcin:129320444 1399.42