Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5311g00018 ATGGAGGAAGCTCAATTGGAGCCTTCAAAACCCTCTGAAATTTTGACGCGTTTTCCTCATTACCGTCGATCACATTTGAAGAGTGGGACTTATCATACCCTTGTTCGTATCCTATCCCACTGCAACAATGAGTGCAGTCTACCTGGCACAATAGGAAATCATGCTGCTTCTCCAGAGCTAAAAAATCATACCAATGGCATCGATAGATTGGGGCAAGAAAACAGGGAAAGGGAGCCTCAGAACTTGCAATTTTCTGGTATTGATCTTATGAATCTCAAGCATCCTGTATGCCACCGGGGAAAACAGGTTCTTGAGAACTCTAGTGGTAGGGAGTTTATAATGGGAGTAGAGGAAGATGTAGGCTCTGCTGGGAGGCAGGATATGATGATTTGGGAAAGTGAAAGTGTTGAGGCCTTGTCTATGAGAACTAATGGTTTGAATAAGGAACAGAAGAAAATAGAAGAGTCGAATCAGATAGCGAAAGGAACTGAAAACCTTGTTGACAATGGCTCAATTCCTTTGAACCTGAGATTAGGTGAAAACCAGAATGGAAGCAGTGAAGTTGACTTGATCGATTACCGAGTGGAGCATGCTGAATTTAGGAGATCCAATATCAACACATCTGGAACTGAAAGCCAGTTATGTATAGAAGGAGAATTTAATCAAAATATCTCCAAAGGCTTTGATGGATCTTTAATTGCTAACAATTCAACATCTGAAACAAAGGAAACCTCCGTACCTGAAATTAGTACTTCAAGTACAGGGCATGAGACACAACAAAAAGAAATGGAATTAGTGGAACCACTTTGTGATGCAATGGTTTCTCTGCCTATTATTGAAGAAGGTGAGTTTGAGAAGGAAGAACGTGGTCAAAGGGTTCATGTAGCAACACAGCTTTCTCTAGATGATGGTATGGAATATAATGACCTGTTGAATTTTAGTATTGAGCTCGAGAGACTACAAAAGGAAATGGAATTGGTGAAACCTGTTTCTGCTGCAGTTGTTTCTTTTCGTACTGCTGAAGAGGGTAAGTTTGAGAAGGAAGAACAACGTGGTCAAAAGGCATGTGAGGCTATTCAATTTTCTGTGGATCAGGGTACGAATAATGAAGAATCAAATTCAAGTGTAAAGCATAAGAAACAAAAAACGGAAATGGACTCAGCAAAACCAGCTTGTGCTGCAATGGTTTCTCTTCCTACTACCAAAGAGGGTAAGTTTGACAAGGAAGAACAACACGGTCAAAAGGCTTCTGAAGCAATGCATGTTTCTGTAGATCAGGCTATGAGTAGTGAAGCATTGATTTCAAGTATAAATCCCAAGAGACAACAAAAGGAAATGGAACTGGTGAAACCTGTTTCTGCTGCAATTATTCCTCTTCCTACTACTGAAGAGGGTGAGTTTAAGAAGGAAGAACAACAGGGACAAAGGGTTCCTGAAGCAATGCAATTTTCTATGGATGAGGGTGTGAATAATGAAGCATCAAATTCACATATAAAGCATGAGAAACAACAAAAGGAAATGAACTCATCAAAACCAGTTTGTGCTGCAATTGTTTCTCTTCCTACTACCAAAGAGGGTGAGCTGGAGAAGGAAGTACAACATGGTCAGAAGGTTCCTGAAGCAATGCACATATCTGTAGATCATGGTATGGATATTGAATCATTGATTTTAACAAGAAAGCCTAAAAGCCAACATAATCCAATGGAATTGGCGAAACCTTGCTGCACTGCAATCGTTTCCCTTCCTGATATTGAAGAGGATGAACTTGAGAAGGAAGAGCATAATTGTAGTGATGGTTCCAAATCCACTAAGACATATGTAAGGAAGAGTAAGAAGAGGGATTTGGGCCTCTCGGACATAGAGCCATCAGGTAGAAAGGTCCCTGAAGCAATGGACTTATCTGTTAATCAGGGTATCAATGGTGAAACATTGAATGTGGGCAAATATAGTGAAGAGATGTGGTTCATGGACATTGATATCTTGGATGCTAAACATGAAATGCAGCATGAAAAAGAGCAGCCAGAAAAAATAACTTGTGTAAATGGTGCAATATTTTCCGATCATCCAGATAAGAAAGAAGGCATTGAAGAGGGAGAAATTTCAGGTGACTTTAGAATGGATGAGAATTCAATTGATACGTCTTCTGCAGATTCCTTGATGATAGAACAGAGGGAACATGATGTACAAAAGCCCAAACATGTTTTTGAAAATATAGTATTTCCTTTTAACATACAGAAAGAAGAAAAAGAAAAACAATATGAATCAACTCAAGATAACAGTAGACTAATGGAACCTAGGAAAAGTGATAAAAATGGGCTTCCAAATGGAGTTGACTTTGGAATCTCTCGGGAAATTGTTGATTATGGAGATTTAGTGGAGCATGGTTCTATATCGGTTACTGGAAAAAGTGAAGACGGGGGAATTAAAGGTGTTGTTGGCTTGCCACCCACTTTGGCTAACAAAGAAGTCTCGCCCGAAGAAGAAGCCACTGATGATCATCAAAACACATCTGCAGTAAGGCAGAAAGCTGGCATCAGTTGTAAGAAAAAGCGTGGTCCTGTTACTGAGGAAAGGAAGGCCAAAAAGAAGGAAAAGAAAAGAAAGAAGCGGGCAGAAAAGAACAGAAAACTTGGGGTTAAAAGGTTGAAGCTGCAGCCAGTACAGAAACCAAAAACTATCACATATTGCCGACATTATCTCAAGGGAAGGTGCCATGAGGGTGACAAGTGCAAGTTCTCACATGACATAGTGCCTCTGACAAAATCAAAGCCGTGCTGTCACTTTGCTCGTCACTCTTGCATGAAAGGTGATGACTGTCCATTTGATCATGAGCTTTCCAAGTATCCTTGTAGCAATTTTGTGAGTAAAGGATCTTGCAGCAGAGGGAATGCTTGTATGTTTTCACACCAGATGCCAACCAAACAAGATGTTGCTACATCTTCAAATGATAGCAAAGCTGAGTTGGAGCCTAAACTATTAGGAAATGCAAACTTAAGCAAGCCGCCTAATATCAGCAGCAGCAGCGCTTCTCAGCAAAAACAGATCTCTGATTCAAAAGGAATTCAAACTCACTTGAATTCAGAAAAAGAGGTGACAGACACTGTAAAGAAACCACCGACAATGGCACCTAAAGGAATTAGTTTCATCAATTTTTCAAAATCATCATCTCCAAAACAAGGAATGGTAACGCCAGACAAGGGAAATTCTGTTCAAATTGGGACCCGTTCTAATCAAAGTGCATCGGGCACAGCTTTAAACTCGATGAATCCTGGGAAAACGCCAGTAGGGGTACCTAAAGGAATTAATTTCCTTTCATTTGGAAAAGGTCGTATTTCCGATTTCAAAAGTACTGTTTGCTCCTTTCTGAATAAGGAAAGTGGTATCAAGTTGTGTCAGAAAGGAAGTTTAGGTACGCCTGAACAAGCATCTCTAGAGAAGGATGATGGCAGTAAAATTGGCATTGGGCTGCAGACTGCTGTGTGCTCAAATGAGACTTTAAAGGAAAATCAATGTGTAGCGGGGAAAATGGATTTGGGTTTCCAAGGAAAAGCTTCAATACATCGTTATAGTAATGGTGTTCAATTTAGCTCAACCTCTCATCATGATCACAGTCTTAGTAGATCAGTGCAAGAGGGAACAAAGGCATATACTCCTCAGACTTCAACTCTGACCTCATCTATGTTTCCAACTTCTCCATTTATTTCAGGTCAATCTTCAGAACGGTTAGCACCTGGACATCATAAGCACGTATATAACTCTGCTCAAAGGGCACTGTTATCAACTCTATCATTTGCAGCAGAGCACGAGTCCAATATTAAGCTAAAGTCCCCTTTTGGTGCATCAGCTGTGAAATTAGAGATGAACAAGGATGTATAG 3876 0.4022 MEEAQLEPSKPSEILTRFPHYRRSHLKSGTYHTLVRILSHCNNECSLPGTIGNHAASPELKNHTNGIDRLGQENREREPQNLQFSGIDLMNLKHPVCHRGKQVLENSSGREFIMGVEEDVGSAGRQDMMIWESESVEALSMRTNGLNKEQKKIEESNQIAKGTENLVDNGSIPLNLRLGENQNGSSEVDLIDYRVEHAEFRRSNINTSGTESQLCIEGEFNQNISKGFDGSLIANNSTSETKETSVPEISTSSTGHETQQKEMELVEPLCDAMVSLPIIEEGEFEKEERGQRVHVATQLSLDDGMEYNDLLNFSIELERLQKEMELVKPVSAAVVSFRTAEEGKFEKEEQRGQKACEAIQFSVDQGTNNEESNSSVKHKKQKTEMDSAKPACAAMVSLPTTKEGKFDKEEQHGQKASEAMHVSVDQAMSSEALISSINPKRQQKEMELVKPVSAAIIPLPTTEEGEFKKEEQQGQRVPEAMQFSMDEGVNNEASNSHIKHEKQQKEMNSSKPVCAAIVSLPTTKEGELEKEVQHGQKVPEAMHISVDHGMDIESLILTRKPKSQHNPMELAKPCCTAIVSLPDIEEDELEKEEHNCSDGSKSTKTYVRKSKKRDLGLSDIEPSGRKVPEAMDLSVNQGINGETLNVGKYSEEMWFMDIDILDAKHEMQHEKEQPEKITCVNGAIFSDHPDKKEGIEEGEISGDFRMDENSIDTSSADSLMIEQREHDVQKPKHVFENIVFPFNIQKEEKEKQYESTQDNSRLMEPRKSDKNGLPNGVDFGISREIVDYGDLVEHGSISVTGKSEDGGIKGVVGLPPTLANKEVSPEEEATDDHQNTSAVRQKAGISCKKKRGPVTEERKAKKKEKKRKKRAEKNRKLGVKRLKLQPVQKPKTITYCRHYLKGRCHEGDKCKFSHDIVPLTKSKPCCHFARHSCMKGDDCPFDHELSKYPCSNFVSKGSCSRGNACMFSHQMPTKQDVATSSNDSKAELEPKLLGNANLSKPPNISSSSASQQKQISDSKGIQTHLNSEKEVTDTVKKPPTMAPKGISFINFSKSSSPKQGMVTPDKGNSVQIGTRSNQSASGTALNSMNPGKTPVGVPKGINFLSFGKGRISDFKSTVCSFLNKESGIKLCQKGSLGTPEQASLEKDDGSKIGIGLQTAVCSNETLKENQCVAGKMDLGFQGKASIHRYSNGVQFSSTSHHDHSLSRSVQEGTKAYTPQTSTLTSSMFPTSPFISGQSSERLAPGHHKHVYNSAQRALLSTLSFAAEHESNIKLKSPFGASAVKLEMNKDV 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5311g00018 1291 MobiDBLite consensus disorder prediction 748 776 - -
Pral5311g00018 1291 Gene3D - 921 985 - -
Pral5311g00018 1291 ProSiteProfiles Zinc finger C3H1-type profile. 949 972 IPR000571 GO:0046872
Pral5311g00018 1291 MobiDBLite consensus disorder prediction 815 877 - -
Pral5311g00018 1291 MobiDBLite consensus disorder prediction 1047 1090 - -
Pral5311g00018 1291 MobiDBLite consensus disorder prediction 748 768 - -
Pral5311g00018 1291 SUPERFAMILY CCCH zinc finger 890 915 IPR036855 GO:0046872
Pral5311g00018 1291 MobiDBLite consensus disorder prediction 998 1022 - -
Pral5311g00018 1291 ProSiteProfiles Zinc finger C3H1-type profile. 919 946 IPR000571 GO:0046872
Pral5311g00018 1291 MobiDBLite consensus disorder prediction 861 877 - -
Pral5311g00018 1291 Gene3D - 848 920 - -
Pral5311g00018 1291 ProSiteProfiles Zinc finger C3H1-type profile. 890 917 IPR000571 GO:0046872
Pral5311g00018 1291 MobiDBLite consensus disorder prediction 237 259 - -
Pral5311g00018 1291 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 528 1283 IPR045124 GO:0003723|GO:0045892
Pral5311g00018 1291 FunFam C3H-type transcription factor 848 919 - -
Pral5311g00018 1291 MobiDBLite consensus disorder prediction 994 1093 - -
Pral5311g00018 1291 Coils Coil 854 874 - -
Pral5311g00018 1291 SMART c3hfinal6 947 971 IPR000571 GO:0046872
Pral5311g00018 1291 SMART c3hfinal6 919 945 IPR000571 GO:0046872
Pral5311g00018 1291 SMART c3hfinal6 891 916 IPR000571 GO:0046872
Pral5311g00018 1291 MobiDBLite consensus disorder prediction 363 390 - -
Pral5311g00018 1291 Coils Coil 146 166 - -
Pral5311g00018 1291 Pfam CCCH-type zinc finger 896 915 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5311g00018 Pral-Chr5311 134693 156726 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5311g00018 zf-CCCH_4 2.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5311g00018 - - pcin:129320444 1394.79