Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5311g00015 ATGGACGCTGTCTTCTCCCTCCCCGAGCCTGCCAGAGCTATTTTTCTGCAATCTATAGTGCAGTTCTCGGGCTGCTCATACATTTGTCTTTGGGCCTATGATTCCCCCTTGTCCAACCGTTTGCTGTGTTTGGATGGATTGTTCAATGTAAGAATCAACCAACCGAGCACTTCTTTGGGGATTAGTGTAGCTCAAAGGCTTTTTGACCAATATAGGAGTTTAACATTTGATGTCAATGACCGTATTCCAGGACTGGCTTTCAAGAACCGCAGCTACCTTGAGTTGCAGCAACCAGATCTTCTAAGACGGGCATGGACCCCAATACAGACACAATTCTATCAGGAAGCAAGGATTAAGACGGCTGTCTTTATGGGGTGCAACAATGGAGAAATGGAACTTGGATTCCCAGACATGTCTCAAGATGATATTCAAACAGCACTAAGGAATTGGTTCCCAGATGAATTTTCCAGATTACAGTCATCATCAAATCAGCAGGCAAACATTGATCAGAGTCAGAACCCACCTTCATCATCTTCATCTTCATTGAGATCACTCTCACTATCTGCAGGAAGCCCTGAATACTCATCCCTTCTGTTCAACATTCCTGGATCTTCTCCTCATTTTCCTCAAGATCATCAATCCCTCACAGCTTCTTCTTCTGGCTCACACCAGCAAGCCATCCAAGCATTAGCTCAAGCCACAGTACAGAGCCCATTTCCCACACCGGAGACTGAAAATGATGCTATAATGAGAGCAATCCTTCATGTTCTTTCTTCTTCTAATCCACCCTCTTCTTCTTCTTCAGCCCCACTTCATCATCATCAGAATTTGCCTAATTATATGGTTCATCCTCATGATGGGACTAGTGCCTTCAGGAGGTACAGCCCCATTATCCCCTCGCCTTCTTCCCAAAGGGGACCAGGAGGTCAATTGCGCAGGCAAGATTTGTTTAAGAGGTCATTGACATTCTTTAGAGGCTTGAATTTCATCAGAATGAGAGAACGTATTCAAACAACTCGCCCGGCCAGCAGTACACAGCTTCATCACATGATTTCAGAAAGAAGAAGGCGTGAAAAGCTCAACGAGAACTTCCAGGCTCTTAGATCTCTTCTTCCTCCAGGAACCAAGAAAGACAAAGCTTCAATACTTACAACAGCAAAGGAAGTACTGAGCTCGTTAATGGCGGAGACAGAAAAGCTTAGAGAGAGAAACAAGTGGCTGGAGGCAGCAACATCATCATCATCAATGGCGGCTGTTCCACCAGCTGTGAAAGAAGCAAGTGGCGATGATCATGAAATCGTAAACGAAAGGTTAAATGTCAGAACAATTTCACGCGAACCAGCATCCAGCCCGTCGGAAGAGAGAATCGTGGACTTGGAAGTGACGGTGAGGGGACAAAGTTCTCAAGTCGATATTCTGATTCGATTACTGGGATTTCTGAAGCAAGATCAAAATCTGAGCTTGATTTCCATGGAAGCTAACACCCATTTAGCTCACGCCACTTCCTTCAACCGTATCACCGTTAGACTGAGGGTTGAGGGGAGTGAATGGGACGAGGCTGCCTTCCGGGAAGCTGTGAGGAGAGTGGCTGCTGACCTGGCACAGTGA 1608 0.459 MDAVFSLPEPARAIFLQSIVQFSGCSYICLWAYDSPLSNRLLCLDGLFNVRINQPSTSLGISVAQRLFDQYRSLTFDVNDRIPGLAFKNRSYLELQQPDLLRRAWTPIQTQFYQEARIKTAVFMGCNNGEMELGFPDMSQDDIQTALRNWFPDEFSRLQSSSNQQANIDQSQNPPSSSSSSLRSLSLSAGSPEYSSLLFNIPGSSPHFPQDHQSLTASSSGSHQQAIQALAQATVQSPFPTPETENDAIMRAILHVLSSSNPPSSSSSAPLHHHQNLPNYMVHPHDGTSAFRRYSPIIPSPSSQRGPGGQLRRQDLFKRSLTFFRGLNFIRMRERIQTTRPASSTQLHHMISERRRREKLNENFQALRSLLPPGTKKDKASILTTAKEVLSSLMAETEKLRERNKWLEAATSSSSMAAVPPAVKEASGDDHEIVNERLNVRTISREPASSPSEERIVDLEVTVRGQSSQVDILIRLLGFLKQDQNLSLISMEANTHLAHATSFNRITVRLRVEGSEWDEAAFREAVRRVAADLAQ 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5311g00015 535 MobiDBLite consensus disorder prediction 159 187 - -
Pral5311g00015 535 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 106 532 IPR044658 -
Pral5311g00015 535 Pfam Helix-loop-helix DNA-binding domain 348 393 IPR011598 GO:0046983
Pral5311g00015 535 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 413 IPR036638 GO:0046983
Pral5311g00015 535 Coils Coil 383 410 - -
Pral5311g00015 535 CDD bHLH_AtbHLH_like 349 401 IPR045239 -
Pral5311g00015 535 MobiDBLite consensus disorder prediction 200 228 - -
Pral5311g00015 535 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 393 IPR011598 GO:0046983
Pral5311g00015 535 SMART finulus 350 399 IPR011598 GO:0046983
Pral5311g00015 535 Gene3D - 343 417 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5311g00015 Pral-Chr5311 120654 125469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5311g00015 1 535 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.314 4.02e-90 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5311g00015 HLH 6.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5311g00015 - - gmx:100807098 522.702