Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5311g00011 ATGGCTCCGAGAATCCTCCTATGCGGCGACGTCATGGGCCGCGTCAACCAGCTCTTCAAGCGTGTCTCATCTGTCAATAAATCGGCTGGTCCGTTCGATGCGCTTTTCTGCGTTGGTCAATTCTTCCCGGAGTCTCCGGACCAACTGGACGAGTTCATGGACTACATTGAGGGTCGAACGCAGGTTCCTCTTCCGACTTACTTCATCGGCGACTATGGCGTCGGTGCCCCTAAAGTTTTATTAGCAGCTTCTAAGGACCCTTCGAACCGTGGCTTCAAAATGGACGGCTTGAGGGTTTGCGATAATTTGTATTGGTTGAAAGGCAGTGGCAAATTCACCATCTTGGGGTTATCTGTGGTCTATTTATCGGGAAGACAATCATTAGATGTTCAACAATTTGGCGTTTACAGTCAAGATGATGTTGATGCTTTGAGAGCAATAGCTGAGGAACCTGGAATAGTCGACTTGTTCTTGACTAATGAATGGCCCAGTGGGGTTACAAATAGAGCAAATGTTTCAGACATTCCTGCTGGACTATCAGATTCCATGGGGAGTGATTCAATCATAGCAGAGTTGGTGGGAGAGATTAAACCACGTTATCACATTGCAGGCAGTAAAGGTATATACTATGCCCGTGAGCCTTATTCTAATATTGAAGCAGTGCATGTGACTCGTTTCATAGGGCTTGCTACTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATTTCTCCCACGCCTGCATCCACCATGTCCTCAACTGAGATTGCCGTGAAGACCACTAATACCACTGAGTCGCCATATGCATTTGTGGAGAAAAGAGCTTCTCCAAAGGACACTGCAAAGAGATCCAGTGATAGTGTCTCTGATTCTCAGTATTGGAGATATGATGTTTCTCAAAAGCGACAGAAACATGGAGCTGGAGATGGTGATAAATTGTGTTTTAAATTTTTGTCTTCTGGTTCTTGTCCAAGGGGAGAAAAGTGCAATTTTCGACATGATTTAGATGCAAGGGAACAGTATATTAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGGAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCATGCAGGATGAGGGGGACAGCTATGCTGAAAAGAGGCCAAGATCTCAAAATTCTAGCTCTAACAGATCAAACGAGTGCTGGTTTTGCTTGTCAAGCCCCAATGTGGAGTCACATTTGATCGCTAGCATTGGAGAAAATTACTACTGTGCATTGCCTAAAGGTCCACTTGTTGAAGACCATGTGCTGCTAATACCAGTTGAGCATTTGTCAAGTACATTATCACTGTCAACGGAATCTGAACTTGAGCTTAGTAAATTCCAGAACAGTCTAAGGATGTATCACAAGAATCAAGGAAAGCAAGTAATCTTTTTTGAGTGGGTTTCAAAGCGTAGTAGTCATGCAAATCTTCAGGTCGTTCCTATTCCAACTTCCAAAACAACACTGGTTGAAAAAATATTCAATTTAGGAGCAGAAAAGCTGGGATTTAAATTTGTATCTAAAAAGTGA 1548 0.4289 MAPRILLCGDVMGRVNQLFKRVSSVNKSAGPFDALFCVGQFFPESPDQLDEFMDYIEGRTQVPLPTYFIGDYGVGAPKVLLAASKDPSNRGFKMDGLRVCDNLYWLKGSGKFTILGLSVVYLSGRQSLDVQQFGVYSQDDVDALRAIAEEPGIVDLFLTNEWPSGVTNRANVSDIPAGLSDSMGSDSIIAELVGEIKPRYHIAGSKGIYYAREPYSNIEAVHVTRFIGLATVGNKDKQKFIHAISPTPASTMSSTEIAVKTTNTTESPYAFVEKRASPKDTAKRSSDSVSDSQYWRYDVSQKRQKHGAGDGDKLCFKFLSSGSCPRGEKCNFRHDLDAREQYIRGVCFDFLNKGKCERGPDCNFKHSMQDEGDSYAEKRPRSQNSSSNRSNECWFCLSSPNVESHLIASIGENYYCALPKGPLVEDHVLLIPVEHLSSTLSLSTESELELSKFQNSLRMYHKNQGKQVIFFEWVSKRSSHANLQVVPIPTSKTTLVEKIFNLGAEKLGFKFVSKK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5311g00011 515 SUPERFAMILY CCCH zinc finger 344 370 IPR036855 GO:0046872
Pral5311g00011 515 ProSiteProfiles Zinc finger C3H1-type profile. 309 337 IPR000571 GO:0046872
Pral5311g00011 515 SUPERFAMILY CCCH zinc finger 313 338 IPR036855 GO:0046872
Pral5311g00011 515 CDD MPP_CWF19_N 6 232 - -
Pral5311g00011 515 Gene3D - 370 503 IPR036265 -
Pral5311g00011 515 SUPERFAMILY HIT-like 382 464 IPR036265 -
Pral5311g00011 515 Gene3D - 298 369 - -
Pral5311g00011 515 FunFam Zinc finger CCCH domain-containing protein 59 369 495 - -
Pral5311g00011 515 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 513 IPR040194 -
Pral5311g00011 515 SMART c3hfinal6 343 368 IPR000571 GO:0046872
Pral5311g00011 515 SMART c3hfinal6 311 336 IPR000571 GO:0046872
Pral5311g00011 515 ProSiteProfiles Zinc finger C3H1-type profile. 341 369 IPR000571 GO:0046872
Pral5311g00011 515 Pfam Protein similar to CwfJ C-terminus 1 384 500 IPR006768 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5311g00011 Pral-Chr5311 96538 100739 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5311g00011 CwfJ_C_1 2e-38 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5311g00011 K24939 - qsa:O6P43_022416 835.099