Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5311g00002 ATGATACCAACTTATCCTTATTCTCTTTCTTCTTCTTCTAATTCTCCTCCTACTTCTACTATGCCTATTATAGATCTTAATATTGCTGAAGATCAAAGCCATGAGCTAATTTTTAGCCCAACCCACCAACCTTCTTCTTCTTCCTCTTCTCTATCATGCCCTATTCCCTTTAACCCCCCTCAGCAGGATCACGCTGGATCTTCCTACTGGGAGTCCAACAACCTACACAATGATCATGTCGAGGCTGGGAAGAATATTATTGCTTCAAGTGGGTCATGGAATGATCAGGAAGAAAAGGGCGGTGTTGAGATCAGAAAGAGGGGACTTAAACTGAAAGTTTGGAAGAGATCAGCATCAGGATCGAGAGAGAGGGAGGATGATGAAAATCATCAAATAACGGAGGATAATGATCCAGTGAAGTGGATGCCTTCAAAGATGAGAATGATGAGGAAGATGATGGCTTCAGATCATAAGGCTTCTTCTTCTTCTTCTTCTGATATCAGTATTATGGGCACCTCTCGGAAGATTATTAACTCTGAAGATCAGAATCAGAATCAACAAAGACCATTGTTATTGTCTCCTCGAGGAGGAACTGATAATAGCAGCAGCAGCATCAATTCTTCAACCCACAGTAACAGTAACAATAATAATAATACTATCACTGTTAGGGTTTGTGCTGATTGCCACACCACCAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGTCCAAAGTCACTATGCAACGCTTGTGGGATTCGACAAAGGAAAGCGAGGCGAGCCATGGCGGCGGCGGCGGCTGCTGCAAACGAGTCGTCGGATCTGCATGTGGCTGGGAAATCTGCAGCAGTGAAAGGGACTTACAGGGTTCACAGCAAAGAGAAGAAGTTGAAATTGGAGTGTGAGACTCATCAGATGAAGAAGAAGAAGCACAAGCTTGATGAAGATCATCATCAGGACATGGAAGCTAACAATAATAATAATTCAAGAGGGAGATCATCGTCGTCATCACCAACAATAATAAACAAGTTTAGTTTTGAGGATTTCACAGTAAGCTTGATGAGTAAGAACTTGGCAGCTGCATCACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATTCTTCTTATGGCTTTATCTTGCAATGGCCTAGTTCATGGATAG 1161 0.4298 MIPTYPYSLSSSSNSPPTSTMPIIDLNIAEDQSHELIFSPTHQPSSSSSSLSCPIPFNPPQQDHAGSSYWESNNLHNDHVEAGKNIIASSGSWNDQEEKGGVEIRKRGLKLKVWKRSASGSREREDDENHQITEDNDPVKWMPSKMRMMRKMMASDHKASSSSSSDISIMGTSRKIINSEDQNQNQQRPLLLSPRGGTDNSSSSINSSTHSNSNNNNNTITVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAANESSDLHVAGKSAAVKGTYRVHSKEKKLKLECETHQMKKKKHKLDEDHHQDMEANNNNNSRGRSSSSSPTIINKFSFEDFTVSLMSKNLAAASQVFPQDEKEAAILLMALSCNGLVHG 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5311g00002 386 MobiDBLite consensus disorder prediction 323 337 - -
Pral5311g00002 386 MobiDBLite consensus disorder prediction 303 322 - -
Pral5311g00002 386 SMART GATA_3 219 271 IPR000679 GO:0006355|GO:0043565
Pral5311g00002 386 Gene3D - 223 261 IPR013088 GO:0006355|GO:0008270
Pral5311g00002 386 Pfam GATA zinc finger 225 258 IPR000679 GO:0006355|GO:0043565
Pral5311g00002 386 MobiDBLite consensus disorder prediction 1 22 - -
Pral5311g00002 386 MobiDBLite consensus disorder prediction 176 218 - -
Pral5311g00002 386 ProSiteProfiles GATA-type zinc finger domain profile. 223 255 IPR000679 GO:0006355|GO:0043565
Pral5311g00002 386 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 385 - -
Pral5311g00002 386 MobiDBLite consensus disorder prediction 116 135 - -
Pral5311g00002 386 CDD ZnF_GATA 224 256 IPR000679 GO:0006355|GO:0043565
Pral5311g00002 386 FunFam GATA transcription factor 21 219 316 - -
Pral5311g00002 386 ProSitePatterns GATA-type zinc finger domain. 225 250 IPR000679 GO:0006355|GO:0043565
Pral5311g00002 386 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 259 - -
Pral5311g00002 386 MobiDBLite consensus disorder prediction 115 141 - -
Pral5311g00002 386 MobiDBLite consensus disorder prediction 303 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5311g00002 Pral-Chr5311 7770 9849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5311g00002 139 386 C2C2-Gata Transcription Factor Family AT4G26150 40.613 1.94e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral5311g00002 GATA 5.3e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5311g00002 - - pcin:129320693 409.453