Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5309g00079 ATGACCGTGACCCACATAGTTGATGAACCTTCTCAAAGCTTCATTCCCCACCCCAGAATGCCTCGCCGATTAATCGAAGTGGGATCTCCTTCATCCTCTCAGAATTTTCAGGCATCATCCGTACAGAATTCTGAAGGATTGTTCTTTCTCTTAGGAGGGATAGTAATGCTCATCATATTGCTGATTCTTCTATTTGTGTGTCGGAATCATATTAAACCAGCAAAACTAATGAAAATGATGGCTTGGAACAAACAGCAGCTTCTGAATGAGCAGCAACGAGAGGTGGTGGAGATGATAGTTTCAACAAGTAAGCAGCAAGGATCCATGGAAGTCTTGAGTGGGAGCCTCCGAACAATTATCTACTTTGACTACTGGACATTGAAGAAGGCAACCAAGAATTTTCATTCCGGTAATCTTCTCGGAAGTGGTGGATTTGGGCCTGTCTATCGGGGAAAGTTGGCAAATGGAAGGCTAATTGCAGTTAAGAAACTGTCTGTTAACAAATCCGAACAAGGAGAGAAAGAATTTCTAGCAGAGGTGAGAATGATCACCAGTATTCAGCACAAAAATCTGGTTCGCCTTATTGGATGTTGCACAGAAGGGATTCAAAGGATGCTTGTGTATGAATATATGAAGAACAAAAGTTTGGACCTCTATATATTTGGAAGCAGTGATCAATTTCTAGACTGGAGAACTAGGTTCCAAATTACCCTTGGAGTAGCACGTGGATTGCAATATTTACATGAGGATTCACATATCAGAATTGTTCATCGAGATATTAAAGCAAGCAATATTCTTCTTGATGAAAAGTTTCGTCCAAGGATTGGGGACTTTGGACTGGCGAGATTCTTCCCTGACGATGAAGATTACCTCAGCACTCAGTTTGCTGGAACATTGGGTTATACAGCTCCTGAATATGCTATTAGAGGGGAATTGTCAGAAAAGGCAGACATCTATAGTTTTGGAGTCCTTCTGCTTGAAATTATTTGCTGCAGGAAAAATACGGATCTTACTTTACCATCAGAAATGCAGTATCTTCCCGAATATGCATGGAAGCTCTTTGACAAGTCAAGGTTGATGGATCTTGTACACCCGAAATTGCGGGAACTTGGATTTATAGAAAAGGATGTTATGCAGGCAATCCATGTGGCGTTCTTATGTATTCAGTCTCAAGCAAACTTAAGGCCTCCAATGTCAGAGATTGTAGCATTGTTGACATTCAAAATTGACATGATTAGAACACCGACGAGGCCATCCTTCCTTGACCGAAGGCAGAGAAAGGATGATGAGAACCATTCTTGGGAAGCCATATCTGAGGCATATCCTTCACCATTGCCCAATGATTCTGCATCCATACCAAAGTAA 1365 0.4147 MTVTHIVDEPSQSFIPHPRMPRRLIEVGSPSSSQNFQASSVQNSEGLFFLLGGIVMLIILLILLFVCRNHIKPAKLMKMMAWNKQQLLNEQQREVVEMIVSTSKQQGSMEVLSGSLRTIIYFDYWTLKKATKNFHSGNLLGSGGFGPVYRGKLANGRLIAVKKLSVNKSEQGEKEFLAEVRMITSIQHKNLVRLIGCCTEGIQRMLVYEYMKNKSLDLYIFGSSDQFLDWRTRFQITLGVARGLQYLHEDSHIRIVHRDIKASNILLDEKFRPRIGDFGLARFFPDDEDYLSTQFAGTLGYTAPEYAIRGELSEKADIYSFGVLLLEIICCRKNTDLTLPSEMQYLPEYAWKLFDKSRLMDLVHPKLRELGFIEKDVMQAIHVAFLCIQSQANLRPPMSEIVALLTFKIDMIRTPTRPSFLDRRQRKDDENHSWEAISEAYPSPLPNDSASIPK 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5309g00079 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Pral5309g00079 454 CDD STKc_IRAK 140 406 - -
Pral5309g00079 454 Gene3D Transferase(Phosphotransferase) domain 1 211 419 - -
Pral5309g00079 454 Gene3D Phosphorylase Kinase; domain 1 93 210 - -
Pral5309g00079 454 MobiDBLite consensus disorder prediction 420 435 - -
Pral5309g00079 454 SMART serkin_6 134 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5309g00079 454 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 211 415 - -
Pral5309g00079 454 Pfam Protein tyrosine and serine/threonine kinase 136 404 IPR001245 GO:0004672|GO:0006468
Pral5309g00079 454 MobiDBLite consensus disorder prediction 420 454 - -
Pral5309g00079 454 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 62 432 - -
Pral5309g00079 454 FunFam Cysteine-rich receptor-like protein kinase 10 98 210 - -
Pral5309g00079 454 SUPERFAMILY Protein kinase-like (PK-like) 111 408 IPR011009 -
Pral5309g00079 454 ProSiteProfiles Protein kinase domain profile. 134 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5309g00079 Pral-Chr5309 484909 489074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5309g00079 122 446 Receptor kinase-like Gene Family AT1G56120 46.687 8.85e-101 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral5309g00079 PK_Tyr_Ser-Thr 6.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5309g00079 - - ccaj:109792436 590.497