Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5309g00077 ATGGAAGATGATGGGACGATATGCAACACAAGGCTGAGTCTAGGGCTTGGAATAGGAGGCTATGTGATGCCATTAAAGGAAGAGAAGTTTGAAGAAGCCATTGTCCATAATCATGATCAGAGAGATTTGATCAGTTTGAAGACCAGAATCGATGAAGAAGAAGATGAAAAGAGCGATCATAGGAATAGTTGCAGAAAGAAATTGAGACTCACCCAGGAACAATCCGCCATGCTTGAAGATAGCTTTAAGCTCCACAGCTCTCTCAACCCACTCCAGAAACAAGAACTTGCTCATCGACTGAATCTGAAGCCCAGACAGATCGAAGTTTGGTTTCAAAACAGAAGAGCAAGGAAAAAGTTGAAGCAGACGGAGGTGGACTGCGAGCTTCTGAGAAAGTGCTGCGAAAACCTAAGAAACGAGAACAGAAGGTTGAAGAAAGAAGTTGAAGAACTACGAGCCCTCAAAAATGGCACTGTTCAACTTTCTAGAGCTCTTTGTTCCTCTTGTGAGAAGCCATTAATCAAAGGCCATTAA 534 0.4288 MEDDGTICNTRLSLGLGIGGYVMPLKEEKFEEAIVHNHDQRDLISLKTRIDEEEDEKSDHRNSCRKKLRLTQEQSAMLEDSFKLHSSLNPLQKQELAHRLNLKPRQIEVWFQNRRARKKLKQTEVDCELLRKCCENLRNENRRLKKEVEELRALKNGTVQLSRALCSSCEKPLIKGH 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5309g00077 177 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Pral5309g00077 177 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Pral5309g00077 177 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Pral5309g00077 177 Coils Coil 43 63 - -
Pral5309g00077 177 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Pral5309g00077 177 Coils Coil 120 157 - -
Pral5309g00077 177 CDD homeodomain 65 122 IPR001356 GO:0003677
Pral5309g00077 177 SUPERFAMILY Homeodomain-like 63 130 IPR009057 -
Pral5309g00077 177 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 51 171 - -
Pral5309g00077 177 SMART HOX_1 63 125 IPR001356 GO:0003677
Pral5309g00077 177 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Pral5309g00077 177 Gene3D - 64 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5309g00077 Pral-Chr5309 466887 468633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5309g00077 51 171 Homeobox Transcription Factor Family AT4G37790 60.630 4.70e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5309g00077 Homeodomain 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5309g00077 - K09338 pcin:129307836 196.052