Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5309g00070 ATGGCTGCCTCTCCAGAGGATCTTCAGCAACACTTTTGCATTGAATGTACTACTACTGTCTTGGCTCCTCCTAATACCGTCCTCTGTCCTCATTGCAATGGCCCCATATCGCCTTCCAATATTGAACGTCTTGGTAATGAATTCATCGACAAGTATAGGGCATTTCAAGCTTCGAAGAAGCCAGCTCCAAAATCTTCAATGGAAAAGATGGAAGAATTCGAGATCACTGAAGATTTGCAGGAACAACAGCCCAAGTGCCCGATATGTCAAGAAGAATTTGAACTGGGAGATAAAGTGAAAGCCATGAAATGTGGCCATTATTTCCATGAGAATTGCAGTGACTCATGGCTTGGGGGTGAGAAAAACGAATGTCCTATTTGTAAGGCCACCTTACCCCAAGACCACAAAGTTATTGGTTACAAGAAGAAGCCTGGTGCTGATGGTTCCTCCTCAAGTTCTTCATTTGCTTGA 471 0.4374 MAASPEDLQQHFCIECTTTVLAPPNTVLCPHCNGPISPSNIERLGNEFIDKYRAFQASKKPAPKSSMEKMEEFEITEDLQEQQPKCPICQEEFELGDKVKAMKCGHYFHENCSDSWLGGEKNECPICKATLPQDHKVIGYKKKPGADGSSSSSSFA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5309g00070 156 MobiDBLite consensus disorder prediction 59 78 - -
Pral5309g00070 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 134 IPR013083 -
Pral5309g00070 156 SMART ring_2 86 127 IPR001841 -
Pral5309g00070 156 Pfam Ring finger domain 85 128 IPR001841 -
Pral5309g00070 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 51 130 IPR045191 GO:0061630
Pral5309g00070 156 SUPERFAMILY RING/U-box 69 134 - -
Pral5309g00070 156 MobiDBLite consensus disorder prediction 64 78 - -
Pral5309g00070 156 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5309g00070 Pral-Chr5309 428200 428670 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5309g00070 47 128 C3H Transcription Factor Family AT1G68180 39.024 6.65e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5309g00070 - - peq:110036766 75.8701