Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5309g00062 ATGTCTAGGCCAGAGGATTTCAAGTCATACTTCTGCGTTAAATGTAATAGATCAGTGTTCATTAATCCTTCAACTAAGCGCTGTACTTTTTGTCAGAGTGAGGACATCGGGCCTTGTAAAATCAAGCGTACACCTGAAGAAACTTACATTCAACAGTTGCGGGCTTTTGAAGCTTCCAAGAAGCCAGCTTCTCAGTCCTCCATAGATGAGATGGAGAAGATGATGATTACTGAGGAGTTGTTGGAAAAACAACCCGAATGCCCAATATGTCGAGAGGAGTTTCAGCTGGAAACAATGGTGAAAGCCATGGGCTGTGGACACTTCTTCCATGAACATTGCATTGCTTCATGGTTAGGGAATAAGAGAAATGCTTGTCCTCTTTGTGAAGCCTCCTTACCTCAAGCCACTAACTTCTACCCATTCGGCTTTGGTGGCGGCGGCGGCGGCTCCTCCTCTAGTTCTTCTAAGGCTTGA 474 0.4536 MSRPEDFKSYFCVKCNRSVFINPSTKRCTFCQSEDIGPCKIKRTPEETYIQQLRAFEASKKPASQSSIDEMEKMMITEELLEKQPECPICREEFQLETMVKAMGCGHFFHEHCIASWLGNKRNACPLCEASLPQATNFYPFGFGGGGGGSSSSSSKA 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5309g00062 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 135 IPR013083 -
Pral5309g00062 157 PANTHER RING ZINC FINGER PROTEIN 77 136 - -
Pral5309g00062 157 Pfam Ring finger domain 86 128 IPR001841 -
Pral5309g00062 157 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Pral5309g00062 157 SMART ring_2 87 128 IPR001841 -
Pral5309g00062 157 SUPERFAMILY RING/U-box 68 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5309g00062 Pral-Chr5309 407032 407505 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5309g00062 46 156 C3H Transcription Factor Family AT1G68180 31.532 2.39e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5309g00062 - - ccin:107268220 75.485