Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5309g00060 ATGGTGAGTGACGACTACTATCTTCATGAAGATCTCATGGAGGAGATCATGGTGAGGTTGCCAGTAAAATCTTTGCTTCGATTCAAATGTGTAGCCAAATCCTGGTATGCTCTAATCACAGACCCTTCTTTTATCTCCAAACATCTTGAACGGTCTAATTCTATCAGTAAGAATCTCCACCTCAAGCTTATCTTCCAATTGTTCAGTCAATATCTGCCAGTCACCATATCTCTGATTTCTAATATAGAGCAACCTCGTGTGATCCGAAACTTAGAATTGCCTTGCTCTACCAACGATTTGAAATGGATATTAGTTTATGGTCAGTGTAATGGGATTTTCTTTCTCTGTGGAGATTATGAAGGAGATGTTCGGTGCTTAATTTTGTGGAACCCAGCAACAAAGGAGGTGAAGGCTATCCCTACGTCTCAAAGGCAACCCAAAGGGATAAATCCCACCAACTTTGGATTTGGGTTTGATCCCATCACAAAGGATTACAAGCTTGTTCGATTTCCAATCTGTCCAGTGGAAAAAAATGACCAACCACTAGTTGAAGTGTACAATCTCAGTACTAATTCTTGGAGAAAAATAGATGCTGATGTCTCCTTTTTTGAATTCCCCTATTCATATAGAGGTCCTTATTTGAATGGGGCTTACCATTGGTTATGTCGTGACCTTGATGAGATCAATAAGTTTATCGTGAGTTTTGATTTTAGCAAAGAGGTTTTTAAGATTATCCAGAGTCCTCCTGGGATTACTTCCTCTCCTACTGAGAATAATCTTCTTACTACAATGGATGAGAGTCTTGCTTGGTTTGTTAAGTATGACTCGATTGAGCTTCGTGTTGAGATTTGGGTGATGAATGAGTATGGTGTTGAGAGCAGTTGGAGTAAGAAGTTTGTGGTTCGACCATTCTCTGAGTCTTGGCACATCTTAGGGTTTTGGGGAGACAATGAGATTCTTGTTTATGAAAACATTAGTGGTCAAATGATTTCATATAATTTTCGGAATGGACAGAGGCAGAGGTTGCAAAACCACTTTCCAACCATGACAATGATGGATTATGTGGAAAGTTTGTGTCCTCTGGGAGGAAAGGGGAAATACCAAAAAATATGA 1113 0.3953 MVSDDYYLHEDLMEEIMVRLPVKSLLRFKCVAKSWYALITDPSFISKHLERSNSISKNLHLKLIFQLFSQYLPVTISLISNIEQPRVIRNLELPCSTNDLKWILVYGQCNGIFFLCGDYEGDVRCLILWNPATKEVKAIPTSQRQPKGINPTNFGFGFDPITKDYKLVRFPICPVEKNDQPLVEVYNLSTNSWRKIDADVSFFEFPYSYRGPYLNGAYHWLCRDLDEINKFIVSFDFSKEVFKIIQSPPGITSSPTENNLLTTMDESLAWFVKYDSIELRVEIWVMNEYGVESSWSKKFVVRPFSESWHILGFWGDNEILVYENISGQMISYNFRNGQRQRLQNHFPTMTMMDYVESLCPLGGKGKYQKI 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5309g00060 370 CDD F-box_AtFBW1-like 7 44 - -
Pral5309g00060 370 PANTHER OS09G0372900 PROTEIN-RELATED 15 313 - -
Pral5309g00060 370 Gene3D - 7 44 - -
Pral5309g00060 370 SUPERFAMILY Galactose oxidase, central domain 102 352 IPR011043 -
Pral5309g00060 370 Pfam F-box domain 10 44 IPR001810 GO:0005515
Pral5309g00060 370 NCBIfam F-box protein interaction domain 107 335 IPR017451 -
Pral5309g00060 370 SUPERFAMILY F-box domain 8 322 IPR036047 GO:0005515
Pral5309g00060 370 SMART fbox_2 8 48 IPR001810 GO:0005515
Pral5309g00060 370 Pfam F-box associated 214 302 IPR006527 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5309g00060 Pral-Chr5309 392430 393542 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5309g00060 184 296 Carbohydrate Esterase AT1G25141 31.624 2.75e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5309g00060 - - pcin:129320976 315.849