Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5309g00059 ATGGCTGACTCTTCACAGAATGTGCAGCAATACTTTTGCATCGATTGCAAAGTTATCTATGCTCCCCCTAATTCTGTCTTCTGTCCTCATTGCCACCGCCCCATATCACTTTCCAAAATGAGACGTCCTGCTGGATATGAATCCATTGAGAGGTATCGGGCATCTCAAGCTTCTTCTAAGAAGCCAGCTCCCAGATCTTCACTGAGGAAGATGGAACAATTGGAGATCACTCCACATTTGCTGGAAAAACAACCCAAGTGCCCTATATGCCAAGAAGAATTTGAACTGGAAGAGAATGTAAAAGCCATGAGATGTGGCCATTATTTTCATGAAGCTTGCAGCCAGTCATGGCTTGGAGGTCAGAAAAACGAATGTCCTTTTTGTAAAGCTACCTTACCCCATGCTGGTTCCTGCTCAACTCCTTCATCGTGTACTCTGACTTAG 444 0.4459 MADSSQNVQQYFCIDCKVIYAPPNSVFCPHCHRPISLSKMRRPAGYESIERYRASQASSKKPAPRSSLRKMEQLEITPHLLEKQPKCPICQEEFELEENVKAMRCGHYFHEACSQSWLGGQKNECPFCKATLPHAGSCSTPSSCTLT 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5309g00059 147 SUPERFAMILY RING/U-box 70 134 - -
Pral5309g00059 147 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 73 131 IPR045191 GO:0061630
Pral5309g00059 147 Pfam Ring finger domain 86 129 IPR001841 -
Pral5309g00059 147 SMART ring_2 87 128 IPR001841 -
Pral5309g00059 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 135 IPR013083 -
Pral5309g00059 147 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5309g00059 Pral-Chr5309 389783 390226 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5309g00059 62 129 C3H Transcription Factor Family AT1G68180 39.706 3.44e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5309g00059 - - oeu:111400750 77.4109