Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5309g00049 ATGCAGATTTTAGGTGAAGAGGATAGCTGTTTGATGTTTGTGTGGGATGCTTGCAAGGATCTGACCCTGGTTATATTAATGGTTGCGGCGGTGGCTTCATTGGCGCTAGGAATAAAATCTGAGGGTATCAAGGAAGGATGGTATGATGGGGGTAGCATTGCATTTGCAGTTATTCTTGTTATTGTGGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCGTGATTTAAATGAGGAGAAGAGAAATATACATCTAGAGGTTATAAGAAATGGCAGAAGAGTTGAGATCTCAATCTATGATATTGTTGTTGGTGATGTTATACCTCTGAATATTGGTGACCAGGTCCCTGCTGATGGAATTATGATCATTGGTCACTCCCTTGCAATTGATGAATCAAGTATGACTGGCGAGAGCAAGATTGTTCACAAGGACTCAAAGGACCCCTTTCTGATGTCTGGATGTAAAGTTGCAGATGGAAGTGGCACCATGCTGGTTACAGGTGTTGGTATTAATACTGAGTGGGGGCTTTTAATGGCTAGTATATCGGAAGACACTGGTGAAGAAACACCCTTGCAGGTACGCTTAAATGGCGTCGCCACCTTCATTGGTATTGTTGGGCTAACTGTGGCTGCTGTTGTTCTGGTTGTGCTACTGGTCAGATATTTTACTGGGCATACCGAAAACTCAGATGGGAGCCCTCAGTTTAAGGCGGGCCATACGAAACTTGGTGTTGCTATTAACGGAGCAATTAAGATAGTCACAGTTGCCGTCACCATTGTAGTGGTTGCAGTGCCTGAAGGGCTTCCTTTAGCAGTCACTTTAACACTTGCCTACTCAATGAGAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGTTCTGCCACAACCATTTGCAGCGATAAGACTGGAACATTGACTTTGAATCAGATGACTGTGACAGAAGCTTACATTGGAGGGAAGAAGACTAATCCTCCTCACAACAAATCCGAGCTCCCTGATAAGTGCCGCTCTTTGCTTGTTGAAGGTGTTGCACAAAATACCAATGGCAGTGTTTATGTACCTGAGGGTGGTAACAACGTTGAGGTCTCTGGATCACCAACAGAAAAGGCAATTTTGAACTGGGGAATTCAGCTGGGGATGGATTTTGAGGCTGTCAGATCAGAGTCATCAATTATACACGTCTTTCCATTCAATTCAGAGAAAAAACGTGGGGGAGTTGCAGTGAGGACGCCTGACTCTAAAGTTCATATACATTGGAAAGGTGCTGCTGAGATAGTACTGGCCTGTTGTGCAGCATATATGGATGCACAGAACCAGTCAGTAGACATGGATGAAGAGAAGATGACATATTTTAGAAAAGCTATTGAAGTCATGGCTGCTGACAGTCTTCGCTGTGTTGCCATTGCATATAGACCTTATGAAATAGAGAAAGTTCCAACTAGTGAAGAAGAACTTGCTCGCTGGTCATTGCCCGAGGATGATCTTATTTTATTGGCTATTGTTGGTCTGAAGGATCCTTGTCGGCCGGGTGTCAAGGATGCAGTGCAACTTTGTCAAAAAGCTGGAGTGAAGGTGCGAATGGTCACCGGCGACAATGTGCAAACGGCAAAAGCAATTGCTCTGGAATGTGGAATACTTGGTTCATCTGCAGATGCCTGGGAGCCAAACATTATTGAAGGCAAAAGATTTCGGGAGTTATCAGACAGAGAGAGAGAGGATATTGCAGAAAGGATATCGGTTATGGGGCGGTCTTCTCCTAATGACAAGCTTTTGCTTGTGCAAACCTTGAGAAAGAAGGGGCATGTTGTTGCTGTGACTGGGGATGGAACTAATGATGCTCCCGCATTGCATGAGGCTGATATAGGTCTTGCAATGGGCATCCAAGGGACAGAAGTTGCTAAAGAAAGCTCTGATATCATCATTTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGACGGTCTGTATATGCAAATATCCAGAAGTTTATACAGTTTCAGCTTACAGTAAATGTGGCAGCTCTTGTAATTAATGTTGTTGCTGCAGTTTCTTCTGGTGATGTCCCGCTGAATACAGTGCAGCTTCTCTGGGTAAATCTGATTATGGATACCCTAGGAGCACTAGCCTTGGCAACTGAACCTCCAACTGATCACCTAATGGATCGATCTCCTGTGGGCCGAAGGGAACCTCTCATAACAAATATCATGTGGAGGAATTTGCTTATACAGGCAATATACCAAATATCTGTTTTGCTTGTACTCAATTTCCGAGGCAGGAGCCTACTGGGTCTGAAGCATGATGATTTAGCCCATTCTCTCAAAGTGAAGAACACTTTAATATTTAATGCATTTGTTTTCTGTCAAATCTTTAATGAATTCAATGCTCGAAAGCCAGATGAATACAACATCTTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTGGGCATAACTCTTGTGCTTCAGATTATCATAATTGAATTTTTGGGGAAGTTCACCAAGACAGTCAGGCTTAACTGGAAGATGTGGATAGTTTCCGTCGTCATTGGAGTCATCGGCTGGCCTCTTGCTGCGGCTGGGAAGCTGATACCCTTGCCTGAAACTCCCTTCAGCGAGTTTTTCACGAGATGTTTCCGGCGATGA 2688 0.4386 MQILGEEDSCLMFVWDACKDLTLVILMVAAVASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVIRNGRRVEISIYDIVVGDVIPLNIGDQVPADGIMIIGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAAVVLVVLLVRYFTGHTENSDGSPQFKAGHTKLGVAINGAIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVTEAYIGGKKTNPPHNKSELPDKCRSLLVEGVAQNTNGSVYVPEGGNNVEVSGSPTEKAILNWGIQLGMDFEAVRSESSIIHVFPFNSEKKRGGVAVRTPDSKVHIHWKGAAEIVLACCAAYMDAQNQSVDMDEEKMTYFRKAIEVMAADSLRCVAIAYRPYEIEKVPTSEEELARWSLPEDDLILLAIVGLKDPCRPGVKDAVQLCQKAGVKVRMVTGDNVQTAKAIALECGILGSSADAWEPNIIEGKRFRELSDREREDIAERISVMGRSSPNDKLLLVQTLRKKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMDRSPVGRREPLITNIMWRNLLIQAIYQISVLLVLNFRGRSLLGLKHDDLAHSLKVKNTLIFNAFVFCQIFNEFNARKPDEYNIFKGVTRNYLFMGIVGITLVLQIIIIEFLGKFTKTVRLNWKMWIVSVVIGVIGWPLAAAGKLIPLPETPFSEFFTRCFRR 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5309g00049 895 SFLD p-type atpase 290 668 IPR044492 -
Pral5309g00049 895 FunFam Calcium-transporting ATPase 63 184 - -
Pral5309g00049 895 ProSitePatterns E1-E2 ATPases phosphorylation site. 310 316 IPR018303 -
Pral5309g00049 895 FunFam Calcium-transporting ATPase 633 882 - -
Pral5309g00049 895 NCBIfam calcium-translocating P-type ATPase, PMCA-type 7 879 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Pral5309g00049 895 SUPERFAMILY HAD-like 306 721 IPR036412 -
Pral5309g00049 895 FunFam Calcium-transporting ATPase 16 73 - -
Pral5309g00049 895 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 315 513 IPR023299 GO:0000166
Pral5309g00049 895 FunFam Calcium-transporting ATPase 318 516 - -
Pral5309g00049 895 NCBIfam HAD-IC family P-type ATPase 248 332 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5309g00049 895 NCBIfam HAD-IC family P-type ATPase 583 696 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pral5309g00049 895 FunFam Calcium-transporting ATPase 9 plasma membrane-type 162 332 - -
Pral5309g00049 895 Pfam E1-E2 ATPase 86 286 - -
Pral5309g00049 895 Gene3D - 305 661 IPR023214 -
Pral5309g00049 895 PANTHER CATION TRANSPORTING ATPASE 8 880 - -
Pral5309g00049 895 CDD P-type_ATPase_Ca_PMCA-like 11 749 - -
Pral5309g00049 895 PRINTS P-type cation-transporting ATPase superfamily signature 616 635 - -
Pral5309g00049 895 PRINTS P-type cation-transporting ATPase superfamily signature 132 146 - -
Pral5309g00049 895 PRINTS P-type cation-transporting ATPase superfamily signature 509 520 - -
Pral5309g00049 895 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Pral5309g00049 895 PRINTS P-type cation-transporting ATPase superfamily signature 531 541 - -
Pral5309g00049 895 PRINTS P-type cation-transporting ATPase superfamily signature 640 652 - -
Pral5309g00049 895 SFLD C1.7: P-type atpase like 290 668 - -
Pral5309g00049 895 PRINTS Sodium/potassium-transporting ATPase signature 301 322 - -
Pral5309g00049 895 PRINTS Sodium/potassium-transporting ATPase signature 427 445 - -
Pral5309g00049 895 PRINTS Sodium/potassium-transporting ATPase signature 51 71 - -
Pral5309g00049 895 PRINTS Sodium/potassium-transporting ATPase signature 688 709 - -
Pral5309g00049 895 Pfam Cation transporting ATPase, C-terminus 701 878 IPR006068 -
Pral5309g00049 895 Pfam haloacid dehalogenase-like hydrolase 305 630 - -
Pral5309g00049 895 SUPERFAMILY Calcium ATPase, transduction domain A 86 181 IPR008250 -
Pral5309g00049 895 SUPERFAMILY Calcium ATPase, transmembrane domain M 9 879 IPR023298 -
Pral5309g00049 895 Gene3D - 8 184 - -
Pral5309g00049 895 Gene3D - 318 516 IPR023299 GO:0000166
Pral5309g00049 895 Gene3D - 16 867 - -
Pral5309g00049 895 FunFam Calcium-transporting ATPase 509 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5309g00049 Pral-Chr5309 308300 329498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5309g00049 11 886 Primary Pumps ATPases AT5G57110 78.335 0.0 1402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5309g00049 K01537 - gmx:100792945 1483