Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5309g00024 ATGGAGAACTTCGGCAGCGAACTCAATCATTTCTGGGAGACGCAAGTGTTCTACCAAACCGAAGAGCTCGAAAGCTGGGCACTGGACGAGGCAATCTCCGGCTACTACGACTCGAGCTCTCCAGATGGCAACGCTTCGTCGTCGACGACCTCCAAGAATATTGTCTCCGAGAGGAATCGCAGGAAGAAGCTCAACGAACGGCTCTTCGCTCTCAGAGCAGTGGTTCCCAATATTAGCAAGATGGATAAGGCGTCGATCATAAAGGATGCGATCGAGTACATTCAGCACTTGCACGAACAAGAGAAGAGCATCGAAGCAGAGATAATGGAGCTTGAATCTGGCAAGAACATGAACATGAACATGAACATGATGAGTAGCAACAGCGGGAATCAGAATTCAAGGTTTGAATATGAACAAGACCTGCCTGTGCTTCTCAGGTCCAAGAGGAACAAGACAGAGCAGCAGCTTTTTGAGTCCGTCAGCGCAAGAAATCCCCCCATTGAAGTCCATGAGCTGAGAGTGACATACATGGGAGAGAAGACGGTGGTGGTGAGCTTGGCGTGCAGCAAGAGGACAGACACAATGGTAAAGCTGTGTGAAGTGTTTGAATCTTTGAAGCTCAAGATTATCACCGCCAACATCACCTCTTTCTCCGGCCGCCTCCTCCACACCCTCTTCATTCAGGCGGATGAGGAAGAGAAAGATGTTGTACAGATAAAGATCCAAGCAGCCATTGCGGCACTCAATGATCTTGAAAGCCCAATGAGCATGTAA 774 0.4897 MENFGSELNHFWETQVFYQTEELESWALDEAISGYYDSSSPDGNASSSTTSKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKSIEAEIMELESGKNMNMNMNMMSSNSGNQNSRFEYEQDLPVLLRSKRNKTEQQLFESVSARNPPIEVHELRVTYMGEKTVVVSLACSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLHTLFIQADEEEKDVVQIKIQAAIAALNDLESPMSM 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5309g00024 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 113 IPR036638 GO:0046983
Pral5309g00024 257 Gene3D - 43 114 IPR036638 GO:0046983
Pral5309g00024 257 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 116 - -
Pral5309g00024 257 Coils Coil 94 114 - -
Pral5309g00024 257 SMART finulus 54 103 IPR011598 GO:0046983
Pral5309g00024 257 MobiDBLite consensus disorder prediction 38 54 - -
Pral5309g00024 257 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Pral5309g00024 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Pral5309g00024 257 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 39 244 - -
Pral5309g00024 257 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5309g00024 Pral-Chr5309 125688 131083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5309g00024 7 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 58.036 5.48e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5309g00024 HLH 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5309g00024 - - gmx:100817978 346.28