Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5309g00023 ATGGAGAACTTCGGCAGCGAACTCAATCATTTCTGGGAGACGCAAGTGTTCTACCAAACCGAAGAGCTCGACGGCAGCTGGGCACTGGACGAGGCAATCTCCGGCTACTACGACTCGAGCTCTCCAGATGGCAACGCTTCGTCGTCGACGACCTCCAAGAATATTGTCTCCGAGAGGAATCGCAGGAAGAAGCTCAACGAACGGCTCTTCGCTCTCAGAGCAGTGGTTCCCAATATTAGCAAGATGGATAAGGCGTCGATCATAAAGGATGCGATCGAGTACATTCAGCACTTGCACGAACAAGAGAAGAGCATCGAAGCAGAGATAATGGAGCTTGAATCTGGCAAGAACATGAACATGAACATGAACATGATGAGTAGCAACAGCGGGAATCAGAATTCAAGGTTTGAATATGAACAAGACCTGCCTGTGCTTCTCAGGTCCAAGAGGAACAAGACAGAGCAGCAGCTTTTTGAGTCCGTCAGCGCAAGAAATCCCCCCATTGAAGTCCATGAGCTGAGAGTGACATACATGGGAGAGAAGACGGTGGTGGTGAGCTTGGCGTGCAGCAAGAGGACAGACACAATGGTAAAGCTGTGTGAAGTGTTTGAATCTTTGAAGCTCAAGATTATCACCGCCAACATCACCTCTTTCTCCGGCCGCCTCCTCCACACCCTCTTCATTCAGGCGGATGAGGAAGAGAAAGATGTTGTACAGATAAAGATCCAAGCAGCCATTGCGGCACTCAATGATCTTGAAAGCCCAATGAGCATGTAA 777 0.4929 MENFGSELNHFWETQVFYQTEELDGSWALDEAISGYYDSSSPDGNASSSTTSKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHEQEKSIEAEIMELESGKNMNMNMNMMSSNSGNQNSRFEYEQDLPVLLRSKRNKTEQQLFESVSARNPPIEVHELRVTYMGEKTVVVSLACSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLHTLFIQADEEEKDVVQIKIQAAIAALNDLESPMSM 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5309g00023 258 Coils Coil 95 115 - -
Pral5309g00023 258 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 41 245 - -
Pral5309g00023 258 Gene3D - 44 115 IPR036638 GO:0046983
Pral5309g00023 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 114 IPR036638 GO:0046983
Pral5309g00023 258 MobiDBLite consensus disorder prediction 38 55 - -
Pral5309g00023 258 SMART finulus 55 104 IPR011598 GO:0046983
Pral5309g00023 258 MobiDBLite consensus disorder prediction 38 59 - -
Pral5309g00023 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983
Pral5309g00023 258 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 117 - -
Pral5309g00023 258 Pfam Helix-loop-helix DNA-binding domain 56 99 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5309g00023 Pral-Chr5309 125688 131083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5309g00023 7 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 57.589 3.05e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5309g00023 HLH 3.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5309g00023 - - gmx:100817978 343.199