Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5309g00020 ATGTCTTCGATCTTAACTGGAGCAGGTGGTGGAAGAACCTACGGGTTCGACTTAGATTTTGTGAAATCTCCATCTCCGTTGATCCGTCCTTCTCATACATCGTCATCTTCTACTTCTTCTGCTTCTTCAACAATATCTGAATCCAGCAATTCCCCTTTAACAATCTCGACCAGAAAATCTCGAGCTCCCCGAAAAAGACCGAATCAAACCTACAATGAAGCTGCTGCTTTGCTATCCACAGCCTATCCCAATCTCTTTTCCAACAAGAACCTCAAAAAACCAGGCCAATTCTGCAGACCTAATGATGCTGCTTTTCTGGATGAATCTGCAGAGGAACTGTTCTTGCCTTTCAGAGTCTTCGATGATTCTGCTGCCTCTTTCCTCCTTCAACAACAAATTCAGCACAAGCCTAGTTCTCCAATGGATCCCAAAATGGTGAATCTACAAGAAAAGTCGTGCCAGAGTCCCGGGGAGATTATCTCGCGAGTGAATTCGTTGGAATTAAACGATGATTGCGAAGAAGATTTCGATGCCGAATCCATTCTCGATGAGGAGATCGACGAGGGAATCGATAGCATCATTGGAAGCAGAGCTGAAGAAGATTCCAATGATGCATCCTGTCACGGCGAAGGGGGGAATAATTGGAGCGTGGATTCCTCAGGATTCGGATGTGGCGCAAAACTCGATTTCCGACTGGGGCTGGTGAAGGCTCTCCGGCGTGTCGATGACAGCAATTGGTGGAATTTCCCGGCGGTTGACATAGTGGAAATCTCGCCAAGAATCAACAAGCACACGTCGTCATTTGCTGCGCCGGCGGAAAAGGAGAAGAAGAAGAAGAAAACGTCGTCGTCGACGACGACGAAGAAAGTGGCGGAGAAGACGAAGATGAAATCACTGAGAGCAATTTCGATTCCGAAATCGAATGCCTCAAAACTGATGTTAAAACTGAACTACGACGACGTTTTGAGTGCTTGGTCCGACCGAGGGTCGCCGTTCGCCAACGGACGTCGTGGCTCCGATTCACCTGGAAATAATGCCAATGCCCAAGAAGCCCATATAGATTTGCTGACAAATATGGGCGGAGTGAGGGAAGCGAGCGTGATGCGCTACAAAGAAAAGCGGCGGACACGTCTCATCTCTAAGAAGATTAGATATCAAGTCAGAAAAGTCAACGCTGATCAACGGCCCAGAATGAAGGGGCGATTTGTGAGGAGGGCCAATCACAGCTCAAATCCAGATGGACGGTGA 1248 0.4784 MSSILTGAGGGRTYGFDLDFVKSPSPLIRPSHTSSSSTSSASSTISESSNSPLTISTRKSRAPRKRPNQTYNEAAALLSTAYPNLFSNKNLKKPGQFCRPNDAAFLDESAEELFLPFRVFDDSAASFLLQQQIQHKPSSPMDPKMVNLQEKSCQSPGEIISRVNSLELNDDCEEDFDAESILDEEIDEGIDSIIGSRAEEDSNDASCHGEGGNNWSVDSSGFGCGAKLDFRLGLVKALRRVDDSNWWNFPAVDIVEISPRINKHTSSFAAPAEKEKKKKKTSSSTTTKKVAEKTKMKSLRAISIPKSNASKLMLKLNYDDVLSAWSDRGSPFANGRRGSDSPGNNANAQEAHIDLLTNMGGVREASVMRYKEKRRTRLISKKIRYQVRKVNADQRPRMKGRFVRRANHSSNPDGR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5309g00020 415 MobiDBLite consensus disorder prediction 27 58 - -
Pral5309g00020 415 MobiDBLite consensus disorder prediction 392 415 - -
Pral5309g00020 415 MobiDBLite consensus disorder prediction 27 68 - -
Pral5309g00020 415 MobiDBLite consensus disorder prediction 268 292 - -
Pral5309g00020 415 ProSiteProfiles CCT domain profile. 363 405 IPR010402 GO:0005515
Pral5309g00020 415 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 32 408 - -
Pral5309g00020 415 Pfam CCT motif 363 405 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5309g00020 Pral-Chr5309 104820 109695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5309g00020 300 407 C2C2-CO-like Transcription Factor Family AT1G73870 44.000 8.23e-23 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral5309g00020 CCT 8.1e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5309g00020 - - qsa:O6P43_022368 419.853