Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5309g00018 ATGCGGGATAGTGAGAAGAATGTAAATAACAGAGGATCTAGAAAACACAAGAATTCAAATGCACAAACCGAGTTAAAGCCATGCTCATCATTGAGATTAAAAACCGGTAGCCCAAAATCCCAAGCGAAGAAGCATAAATTAAAACAAAAGTCTCGTGCACACAGAGTTGGTGCAAATATATCAAGGCAGGCAGGCACTGGCTCTTCTAAGGAGGACCCAAGCAAGGACTTTTCGAATAAAAACTTGATCATCAGAAAAAGTCTACATAAAACCAATGGAAATCCATCACAGAAGCCCAGCTCATCAAAGCCTCAAGGTGAAAAAGTTTCGCTTGGCTCTAAGAAAGAGGGTAAAGATGTTGATGAGGAGGTAAACATTCAGAAGCTTAAAAGGAGAAGGAGAAAAAGGAAAAATCAAAGAAATAATGTGGATCTTGATGATGCTTCACGCCTGCAGAGGAGACTAAGGTATCTTCTGATTAAAATAAAGCGGGAGCAGAACCTTATTGATGCATACTCTGGAGAAGGTTGGAAAGGTCAGAGTCAAGAGAAGATCAGGCCAGAAAAGGAGTTGCTAAGAGCTCAGAAGCAGATTTTACATTGTAAGCTTAGTATTCGTGATGCCATTCACCAGTTGGATACTCTTAGTTCGGTGGGTAGCATTGAGGGCTCTGTCATTGCTCCAGATGGATCTGTTTACCATGAACATATATTCTGTGCAAAGTGCAAATTGCGTGAAGCTTTCCCAGATAATGATATAATACTATGTGATGGCACCTGTAACTGTGCTTTTCACCAAAAATGTCTTGATCCTCCATTGGACACTGAAAATATTCCTCCTGGAGATCAGGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATGGAAATACTGGAAGCAATAAATGCGCATATTGGGACTCATTTCTCCCTGGACAGCACATGGCAGGATGTATTCAAGGAAGAAGCTTCCATACCTGAGGGGGATATTAGTTTACTGAATCCAGGAGAAGAATGGCCATCAGATGATTCTGATGATGACGATTATAATCCTGAAAGGAGAGAGGATAGCCATAATATCAGTGCAGACGATATTGATGGTGTTGCAGCTGATGATTCAAGCAGCTCTACCAGTCTGTGGAATTCAGATGATGGATGTTCTCCAGGAACAGGAAAGGAAAGCATTGACCATGAATTTTTCTCTCGGAATAATTGCGTAGATTCTGATGAATCTGGAGAGATAGCATGTGGCCGGAGGCAGCGAAAAGCAGTTGATTACAAGAAACTCTATGATGAAATGTTTGGGAAAGATGCTCCTGCACTTGAGCAAGTTAGTGAAGATGAAGACTGGGGTCCAGGCAGAAGAAAGCGAAGAGAAAAAGAGTCTGATGCTGCCAATACTCTGATGACTCTCCATGAAAGTGAGAACAAATGTTCCCAAAACGAGCAGAATGTAATAAAGGAATTTTCTTCAGACTTCCAAAGTAAAAGGCCTTGTTTCAGGCTTCCACGCCATGCAGTTGAGAAGCTTCGCCAGGCTTTTGCAGAGAACGAACTTCCTTCAAGATCCGTGAAGGAGGGACTTTCAAAAGAGTTGGGACTAGATGCTGATAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAGCCAGAAAGCAAGCAGAAGGAGCAGAACAGCCTCAGCGCATCACTTCTGGAAACCCAAAAGATTCTAGTTTACAAAATCCGGAGGTAGAGCATTTGACATCCAAGGAACCCACAAAAGTAACTTTGACTGAGCCCCAGACGAATGCTATAAATGACAGCCACAAAAAGCGCTTAAAGTCATCCCGTGGTAAACCTTTAAAGAAAAGGAAACAAGAGATATCTCCACCACAGTCAAAAGAAAATGGCAAGAAGGACTTGGTGGAGTTCAGTGATGATGTTAGCTTGAAGAAACTGTTGAAAGCAAAAAAGAAGAAAGTAACTTATAAATTTGAGGGAGACTCTGAAGCAGCAGAGTTCGAATTTGAAAGACTTGGCAAACTGAAGAATAGAGTAGACAGTATGATGCAAAAAATTCTTAAAATTAAAAGTCACACAGCAAAGGATTCAAAAGAACCCAAATCCAAAGAGCCCCTGGTTATATATGTACCTGTAGCCGAGTTAAAAGAAAAAAGTTGA 2169 0.4108 MRDSEKNVNNRGSRKHKNSNAQTELKPCSSLRLKTGSPKSQAKKHKLKQKSRAHRVGANISRQAGTGSSKEDPSKDFSNKNLIIRKSLHKTNGNPSQKPSSSKPQGEKVSLGSKKEGKDVDEEVNIQKLKRRRRKRKNQRNNVDLDDASRLQRRLRYLLIKIKREQNLIDAYSGEGWKGQSQEKIRPEKELLRAQKQILHCKLSIRDAIHQLDTLSSVGSIEGSVIAPDGSVYHEHIFCAKCKLREAFPDNDIILCDGTCNCAFHQKCLDPPLDTENIPPGDQGWFCKFCECKMEILEAINAHIGTHFSLDSTWQDVFKEEASIPEGDISLLNPGEEWPSDDSDDDDYNPERREDSHNISADDIDGVAADDSSSSTSLWNSDDGCSPGTGKESIDHEFFSRNNCVDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPALEQVSEDEDWGPGRRKRREKESDAANTLMTLHESENKCSQNEQNVIKEFSSDFQSKRPCFRLPRHAVEKLRQAFAENELPSRSVKEGLSKELGLDADKVSKWFKNARYLALKARKQAEGAEQPQRITSGNPKDSSLQNPEVEHLTSKEPTKVTLTEPQTNAINDSHKKRLKSSRGKPLKKRKQEISPPQSKENGKKDLVEFSDDVSLKKLLKAKKKKVTYKFEGDSEAAEFEFERLGKLKNRVDSMMQKILKIKSHTAKDSKEPKSKEPLVIYVPVAELKEKS 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5309g00018 722 Pfam PHD-finger 238 293 IPR019787 -
Pral5309g00018 722 Gene3D - 494 560 - -
Pral5309g00018 722 SUPERFAMILY Homeodomain-like 494 558 IPR009057 -
Pral5309g00018 722 Pfam Homeodomain 503 547 IPR001356 GO:0003677
Pral5309g00018 722 CDD PHD_PRHA_like 238 290 IPR045876 -
Pral5309g00018 722 ProSitePatterns Zinc finger PHD-type signature. 239 290 IPR019786 -
Pral5309g00018 722 SMART HOX_1 494 556 IPR001356 GO:0003677
Pral5309g00018 722 FunFam pathogenesis-related homeodomain protein-like 230 290 - -
Pral5309g00018 722 MobiDBLite consensus disorder prediction 553 636 - -
Pral5309g00018 722 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 17 721 - -
Pral5309g00018 722 MobiDBLite consensus disorder prediction 369 387 - -
Pral5309g00018 722 FunFam pathogenesis-related homeodomain protein 494 558 - -
Pral5309g00018 722 MobiDBLite consensus disorder prediction 325 392 - -
Pral5309g00018 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 287 IPR013083 -
Pral5309g00018 722 ProSiteProfiles 'Homeobox' domain profile. 492 552 IPR001356 GO:0003677
Pral5309g00018 722 ProSiteProfiles Zinc finger PHD-type profile. 236 293 IPR019787 -
Pral5309g00018 722 MobiDBLite consensus disorder prediction 1 145 - -
Pral5309g00018 722 MobiDBLite consensus disorder prediction 38 55 - -
Pral5309g00018 722 MobiDBLite consensus disorder prediction 109 128 - -
Pral5309g00018 722 MobiDBLite consensus disorder prediction 560 582 - -
Pral5309g00018 722 MobiDBLite consensus disorder prediction 618 636 - -
Pral5309g00018 722 MobiDBLite consensus disorder prediction 441 462 - -
Pral5309g00018 722 MobiDBLite consensus disorder prediction 1 21 - -
Pral5309g00018 722 CDD homeodomain 495 555 IPR001356 GO:0003677
Pral5309g00018 722 MobiDBLite consensus disorder prediction 84 108 - -
Pral5309g00018 722 SUPERFAMILY FYVE/PHD zinc finger 230 296 IPR011011 -
Pral5309g00018 722 MobiDBLite consensus disorder prediction 22 37 - -
Pral5309g00018 722 SMART PHD_3 238 291 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5309g00018 Pral-Chr5309 95468 102393 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5309g00018 141 562 Homeobox Transcription Factor Family AT4G29940 59.725 2.22e-159 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Pral5309g00018 Homeodomain 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5309g00018 - - gmx:100787118 845.499