Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5308g00005 ATGGATTTAGAAGAAAAGTTCCTTGTTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGCACTCCGGAAAAAAATGGTCATTCAGATGATGCTTCAAGAAGCCCTGAACTCCTTCAAGAGTTCTTGAAATCTGGTCCTAAGAAGGAACTTCTTCGAATGTGCTTTTATAAGGACAGAAAGAACATTTCATTAAAAAGAAAGATGCCAGAAACTAAGTCAACCAGTAAGGTTGTCAAGAAACAGGACAACAAAAAAGTTTCCACTGTCAGCAACCAGCCCTCTAGGAAGCAGCATAGGAAGAGCCAAAACCCTACAAGGCTCAGGCCAGTTCCTGACCAGCTTTCTGATTCTGGACATTCAGACTCCTGGATATGTAAAAACTCTGCTTGTAGAGCTTTTCTATCTGCAGAGGACAAATTTTGTAGAAGGTGCTCTTGCTGTATCTGTCACCTATTTGATAGTAATAAGGATCCTAGTCTTTGGTTAGTATGCTCATCTGAACCTGATGAAGGGGACTCCTGCGGGTTCTCTTGCCATATTGAGTGCGCCCTTCAACATGAAAAAGTGGGAGTCGTTGATCATGGGCAACTGATGCAACTAGATGGGGGCTATTGTTGTGCATCCTGTGGTAAAGTTACAGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATGGCAAAAGATGCTCGGCGAGTTGATGTGCTCTGCTATAGGCTATATTTGAGTTACAAGCTGTTGGATGGGACTTCAAGGTTTAAAGAATTGCATGACTTTGTACTAGAGGCTAAAGCAAAGCTAGAAACAGAGGTTGGTCCAGTTAATGGGATTTCTGCAAAGATGGGGCGGGGCATTGTCAGCAGACTCTCTATTGCCAGTGAGGTGCAGAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATGGGTGGCCTTCCGTTGTGAATCCAGATTCCATAGATGGTTCACTTCCTCCTGCCTGCAAATTTGTTTTTGAAGAGGTGACAGCATCCACAGTCAAAATCATTTTGATTGACAAGTCCACTGCGTCTTCTAAGGACATCAAGGGCTACAAGCTGTGGTACTACAAGAGTAATGAGGAGTTGCTCGCAAACGATCCTGTTTGTGAGGTCCCAAATAATCAGAAGAGGATTCTGTTATCCAACCTCCAGCCGTCCACAGAATATACTTTTCGCATTATATCTTATTCCGGTAAGGGTCAGCTGGGTTATTCTGAAGCCAAGTGTTTCACCAAGAGCGCTGATCCTGCTAAAAAAGGTTCCTCTTTACTAATTGATTTAGGTCGTAAAAAAGAGAACATTGAAATTGGAGCCAGTTCATCGGGCTCAAAAACAGAGCCCAATCCTACAGTAGCAGATTCAGGATTTAAGGTTCGAGACCTTGGGAAAGTTGTGGGTCTTGCTTGGACTCAAGATCAAGGTCCCTTGGAAGGGTTTTGCAGTGTTGATAAGAAAAATTGCTGCAAAGAAACTGAAATGGTCAAGCCTAAAATTTCAGAAGAGCAGTTGCCTCCAGTTTCCCGGGGTCTTGATTTAAATGTTGTTTCAGTGCCTGATCTAAATGAAGAAATAGTCCCTCCTTTTGAGTCATCAAAGGATGAAGATAATGGCTGCACTTTGCAGAAGGCTGTTGAAGCAGACGATGATGCTGCTTCTCGGTATGCACAGAAAATCAGTTTAGCAAAATCGCATGGTAGTGGTGACTCCCATACCTGGATGAACGGGCCAACTGGAGAAGTTCCAACTGGTGACTCCCGCGTAGATGCATGCAAGAAAAGGGTAGCTAGCATTAATGAAGAGACACATGATTGCAATAGCACTTTGGCAAATGGCTCTCCTCTCAGAGTATCAGATGGTACATGCTCACTGGATGAAAACTATGAGTATTGTGTGAAAGTGTTTCGGTGGCTAGAATGTGAGGGTCACATCAAGCAGGAATTCCGGTTGAAGTTGTTAACATGGTTTAGTTTGAGGTCAACAGAACAGGAACGCAGGGTTGTCAACACCTTCATTCAAACTTTGCTTGATGATCCATGTAGTTTGGCAGGGCAACTGATTGACTCATTTTCTGATATCATATCCAACAAGAGGCCCAGAAATGCTTAG 2127 0.433 MDLEEKFLVKVSGVQSLSSSVQSTPEKNGHSDDASRSPELLQEFLKSGPKKELLRMCFYKDRKNISLKRKMPETKSTSKVVKKQDNKKVSTVSNQPSRKQHRKSQNPTRLRPVPDQLSDSGHSDSWICKNSACRAFLSAEDKFCRRCSCCICHLFDSNKDPSLWLVCSSEPDEGDSCGFSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNMAKDARRVDVLCYRLYLSYKLLDGTSRFKELHDFVLEAKAKLETEVGPVNGISAKMGRGIVSRLSIASEVQKLCSLAIEKADGWPSVVNPDSIDGSLPPACKFVFEEVTASTVKIILIDKSTASSKDIKGYKLWYYKSNEELLANDPVCEVPNNQKRILLSNLQPSTEYTFRIISYSGKGQLGYSEAKCFTKSADPAKKGSSLLIDLGRKKENIEIGASSSGSKTEPNPTVADSGFKVRDLGKVVGLAWTQDQGPLEGFCSVDKKNCCKETEMVKPKISEEQLPPVSRGLDLNVVSVPDLNEEIVPPFESSKDEDNGCTLQKAVEADDDAASRYAQKISLAKSHGSGDSHTWMNGPTGEVPTGDSRVDACKKRVASINEETHDCNSTLANGSPLRVSDGTCSLDENYEYCVKVFRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLLDDPCSLAGQLIDSFSDIISNKRPRNA 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5308g00005 708 PANTHER VIN3-LIKE PROTEIN 2-RELATED 17 707 IPR044514 GO:0010048|GO:0040029
Pral5308g00005 708 MobiDBLite consensus disorder prediction 13 39 - -
Pral5308g00005 708 SUPERFAMILY Fibronectin type III 353 424 IPR036116 GO:0005515
Pral5308g00005 708 CDD FN3 329 418 IPR003961 GO:0005515
Pral5308g00005 708 MobiDBLite consensus disorder prediction 87 123 - -
Pral5308g00005 708 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Pral5308g00005 708 ProSiteProfiles Fibronectin type-III domain profile. 325 423 IPR003961 GO:0005515
Pral5308g00005 708 MobiDBLite consensus disorder prediction 569 592 - -
Pral5308g00005 708 MobiDBLite consensus disorder prediction 13 28 - -
Pral5308g00005 708 MobiDBLite consensus disorder prediction 569 585 - -
Pral5308g00005 708 MobiDBLite consensus disorder prediction 69 86 - -
Pral5308g00005 708 Pfam Fibronectin type III domain 329 411 IPR003961 GO:0005515
Pral5308g00005 708 CDD PHD_VIN3_plant 148 212 - -
Pral5308g00005 708 Gene3D Immunoglobulins 322 429 IPR013783 -
Pral5308g00005 708 MobiDBLite consensus disorder prediction 69 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5308g00005 Pral-Chr5308 41162 50684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5308g00005 125 708 PHD Gene Family AT3G24440 47.571 4.98e-172 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5308g00005 - - gmx:100780157 1099.35