Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5308g00004 ATGCCAGAAACTAAGTCAACCAGTAAGGTTGTCAAGAAACAGGACAACAAAAAAGTTTCCACTGTCAGCAACCAGCCCTCTAGGAAGCAGCATAGGAAGAGCCAAAACCCTACAAGGCTCAGGCCAGTTCCTGACCAGCTTTCTGATTCTGGACATTCAGACTCCTGGATATGTAAAAACTCTGCTTGTAGAGCTTTTCTATCTGCAGAGGACAAATTTTGTAGAAGGTGCTCTTGCTGTATCTGTCACCTATTTGATAGTAATAAGGATCCTAGTCTTTGGTTAGTATGCTCATCTGAACCTGATGAAGGGGACTCCTGCGGGTTCTCTTGCCATATTGAGTGCGCCCTTCAACATGAAAAAGTGGGAGTCGTTGATCATGGGCAACTGATGCAACTAGATGGGGGCTATTGTTGTGCATCCTGTGGTAAAGTTACAGGGATACTTGGATGTTGGAAGAAGCAGCTAAATATGGCAAAAGATGCTCGGCGAGTTGATGTGCTCTGCTATAGGCTATATTTGAGTTACAAGCTGTTGGATGGGACTTCAAGGTTTAAAGAATTGCATGACTTTGTACTAGAGGCTAAAGCAAAGCTAGAAACAGAGGTTGGTCCAGTTAATGGGATTTCTGCAAAGATGGGGCGGGGCATTGTCAGCAGACTCTCTATTGCCAGTGAGGTGCAGAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATGGGTGGCCTTCCGTTGTGAATCCAGATTCCATAGATGGTTCACTTCCTCCTGCCTGCAAATTTGTTTTTGAAGAGGTGACAGCATCCACAGTCAAAATCATTTTGATTGACAAGTCCACTGCGTCTTCTAAGGACATCAAGGGCTACAAGCTGTGGTACTACAAGAGTAATGAGGAGTTGCTCGCAAACGATCCTGTTTGTGAGGTCCCAAATAATCAGAAGAGGATTCTGTTATCCAACCTCCAGCCGTCCACAGAATATACTTTTCGCATTATATCTTATTCCGGTAAGGGTCAGCTGGGTTATTCTGAAGCCAAGTGTTTCACCAAGAGCGCTGATCCTGCTAAAAAAGGTTCCTCTTTACTAATTGATTTAGGTCGTAAAAAAGAGAACATTGAAATTGGAGCCAGTTCATCGGGCTCAAAAACAGAGCCCAATCCTACAGTAGCAGATTCAGGATTTAAGGTTCGAGACCTTGGGAAAGTTGTGGGTCTTGCTTGGACTCAAGATCAAGGTCCCTTGGAAGGGTTTTGCAGTGTTGATAAGAAAAATTGCTGCAAAGAAACTGAAATGGTCAAGCCTAAAATTTCAGAAGAGCAGTTGCCTCCAGTTTCCCGGGGTCTTGATTTAAATGTTGTTTCAGTGCCTGATCTAAATGAAGAAATAGTCCCTCCTTTTGAGTCATCAAAGGATGAAGATAATGGCTGCACTTTGCAGAAGGCTGTTGAAGCAGACGATGATGCTGCTTCTCGGTATGCACAGAAAATCAGTTTAGCAAAATCGCATGGTAGTGGTGACTCCCATACCTGGATGAACGGGCCAACTGGAGAAGTTCCAACTGGTGACTCCCGCGTAGATGCATGCAAGAAAAGGGTAGCTAGCATTAATGAAGAGACACATGATTGCAATAGCACTTTGGCAAATGGCTCTCCTCTCAGAGTATCAGATGGTACATGCTCACTGGATGAAAACTATGAGTATTGTGTGAAAGTGTTTCGGTGGCTAGAATGTGAGGGTCACATCAAGCAGGAATTCCGGTTGAAGTTGTTAACATGGTTTAGTTTGAGGTCAACAGAACAGGAACGCAGGGTTGTCAACACCTTCATTCAAACTTTGCTTGATGATCCATGTAGTTTGGCAGGGCAACTGATTGACTCATTTTCTGATATCATATCCAACAAGAGGCCCAGAAATGCTTAG 1917 0.4397 MPETKSTSKVVKKQDNKKVSTVSNQPSRKQHRKSQNPTRLRPVPDQLSDSGHSDSWICKNSACRAFLSAEDKFCRRCSCCICHLFDSNKDPSLWLVCSSEPDEGDSCGFSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNMAKDARRVDVLCYRLYLSYKLLDGTSRFKELHDFVLEAKAKLETEVGPVNGISAKMGRGIVSRLSIASEVQKLCSLAIEKADGWPSVVNPDSIDGSLPPACKFVFEEVTASTVKIILIDKSTASSKDIKGYKLWYYKSNEELLANDPVCEVPNNQKRILLSNLQPSTEYTFRIISYSGKGQLGYSEAKCFTKSADPAKKGSSLLIDLGRKKENIEIGASSSGSKTEPNPTVADSGFKVRDLGKVVGLAWTQDQGPLEGFCSVDKKNCCKETEMVKPKISEEQLPPVSRGLDLNVVSVPDLNEEIVPPFESSKDEDNGCTLQKAVEADDDAASRYAQKISLAKSHGSGDSHTWMNGPTGEVPTGDSRVDACKKRVASINEETHDCNSTLANGSPLRVSDGTCSLDENYEYCVKVFRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLLDDPCSLAGQLIDSFSDIISNKRPRNA 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5308g00004 638 MobiDBLite consensus disorder prediction 17 53 - -
Pral5308g00004 638 Pfam PHD - plant homeodomain finger protein 58 176 IPR032881 -
Pral5308g00004 638 CDD FN3 259 348 IPR003961 GO:0005515
Pral5308g00004 638 MobiDBLite consensus disorder prediction 499 522 - -
Pral5308g00004 638 SUPERFAMILY Fibronectin type III 283 354 IPR036116 GO:0005515
Pral5308g00004 638 CDD PHD_VIN3_plant 78 142 - -
Pral5308g00004 638 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 637 IPR044514 GO:0010048|GO:0040029
Pral5308g00004 638 MobiDBLite consensus disorder prediction 499 515 - -
Pral5308g00004 638 MobiDBLite consensus disorder prediction 1 53 - -
Pral5308g00004 638 Pfam Fibronectin type III domain 259 341 IPR003961 GO:0005515
Pral5308g00004 638 ProSiteProfiles Fibronectin type-III domain profile. 255 353 IPR003961 GO:0005515
Pral5308g00004 638 MobiDBLite consensus disorder prediction 1 16 - -
Pral5308g00004 638 Gene3D Immunoglobulins 252 359 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5308g00004 Pral-Chr5308 40954 50684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5308g00004 55 638 PHD Gene Family AT3G24440 47.571 1.06e-172 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5308g00004 - - gmx:100780157 995.727