Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5308g00002 ATGGCAAATCGACTGAAGGAAGATGAGAAGAATGAGCGAATAATTCGAGGTCTTCTCAAACTTCCAGCGAACAGAAGATGTATTAATTGCGACAGTCTGGGGCCACAATATGTGTGCACAAATTTCATGACGTTTGTTTGCACAACCTGTGGTGGGATACACCGGGAATTTACGCATAGAGTAAAGTCAATATCGATGGCCAAGTTCACTTCACAAGAAGTTAGTGCACTTCAGGAAGGAGGAAATCAGCATGCAAAGGAAGTTTATTTTAAAGAATGGGACCCAAAAAGCCATTCTCTCCCTGATAACAGTAATGTTGGCAGGCTCCGCAACTTTATTAAACAAGTTTATGTGGATAAAAGATTCACTGGTGAGAGGACCTATGACAAATCACAGAGAGTAAATACAGGTGACAAGGATAATTTCTCAGTAAACTCGAGAGTTCAATCATATCAGGGTGATCCTAAAAGTCCACCATATGATGACAAATATAAACACCGATATAGTGACAGCTCTAGTCCGGGTGGAAGAAGTCCTGGGTATGATCAAGAAAGTAGGCAGTACAGTAATGATAAGAGAAATCCTAGTCATCCTCCGATCAATGATTGGCATCAAGAAGATAGATTTGGAGATGGAAGGAGGTTTGAAGGTCGTATGGTATCTGATGGAGATTATAAGCTGGAAGGCCAATTGCCTGGGCAAGCCAACAACCCGGATTCCTCAAGCCCACCTGTGGTTCGGTCTGTTAGAGATATTTTGGGAGAAAATGCAGCGTCTCTTCAAATGAGTAAACCCTCTGAAACGAATAGTAAAAAAGCTAATGATGGCTCAGCTCTCACACAGAGGACTGTATGTTCCAGTAGCTTGACATCCAACATTGGAAACCCTGCAGAAGCTAAGCTTGAGACCCCTAAGAGTCTTATTGATTTTGGTGCTGAGCCTGAGCCTCCTCTGGCTCCAGCAATTACACACGCCCAACAAACTATTGCCCAATCCATTGTGGAGCAACCAAATTCCAGTGATGTCAACAATTGGGCCTCTTTTGATGTGCCCCCAGAAGTGAAAGCAACTCAAACTCCTTCAAATGTAAATTCACTAGAATCCATGCTTTCCCAATTGTCAGTATCATCATCATCACCACCAGCTCATGCTTCTCAAGTCCAGCATAGTTCCAGTGTTGTAGTACCCATTCCTGGGAGCACTATGACATTACAAAGAACTGGGAACTTATCTGTTTCACCTGCTGGGCCTGCACCAGCACCATCTCTTACTGCTACTGTTGTTGGAGCTGCACCTATCAGCACCTTTGCGCCTATTCCATCCAATAGTGCTTTAGCGTCACACCATCTGCAGCCTTTGTTCCCTCCCAATGTTGGTCAGTCTTCAAATTATCAGTCTACATCACCACCAGCAGGAGCATTAAATAATCAGCCATGGGGTATACCTCCAGCACCAACAATGCAAGGCCATCCAAACATGTCACTGCTACATGTGTCCCATGTTATCTCTAAGCCTGCCACTGAGACTAGCTCTAATGCGGCTTCAGGATCGCCTTTAGAAGTAAAACCAAGTGGAAGGAAAGAACTTCCTGAGGATCTTTTTACTGTAAAGTATTCTTACTTTCCTGCTGCAGTTCCGGGGTGGCAAATGATTCCTTCTCATGGGATGGGAACCTCAATGCCATATAATGCTGTGCCCATGCCAAGTCTTCAGCGACCATCAAAATCAACAAATCCATTTGATATTGGCGAACCACCAGTTCAAACCACAGCTTTTGCTTTGAGATCATCCTTGCAAGGTGCTCTGCCAGGGGTATCAACTTCAGGTTTAATGCCTCCTTTAAGCCTAAGTAATCCATCACTTGCGTGGAATCCACCTGGGTACGGATTAATGCCACCCCAACAAATGCAGCCTCATCCATCAGCAATGACAACAAGACCTTACATGGGGCAACTAGTGCAAACGAACATGGCAATGCCAAGGCATCAAGAAATTGGGAGCTTTGGTGCTGAGGGAGCCGCTTTTGGCTTCTCAAACTTGAATCAGCATCTCTCTGGTACATTTTCAGCCTCTGCTTCCTCAAATCTCTCTTCTGCAGGACGGAATCCATTTGGATGA 2118 0.4462 MANRLKEDEKNERIIRGLLKLPANRRCINCDSLGPQYVCTNFMTFVCTTCGGIHREFTHRVKSISMAKFTSQEVSALQEGGNQHAKEVYFKEWDPKSHSLPDNSNVGRLRNFIKQVYVDKRFTGERTYDKSQRVNTGDKDNFSVNSRVQSYQGDPKSPPYDDKYKHRYSDSSSPGGRSPGYDQESRQYSNDKRNPSHPPINDWHQEDRFGDGRRFEGRMVSDGDYKLEGQLPGQANNPDSSSPPVVRSVRDILGENAASLQMSKPSETNSKKANDGSALTQRTVCSSSLTSNIGNPAEAKLETPKSLIDFGAEPEPPLAPAITHAQQTIAQSIVEQPNSSDVNNWASFDVPPEVKATQTPSNVNSLESMLSQLSVSSSSPPAHASQVQHSSSVVVPIPGSTMTLQRTGNLSVSPAGPAPAPSLTATVVGAAPISTFAPIPSNSALASHHLQPLFPPNVGQSSNYQSTSPPAGALNNQPWGIPPAPTMQGHPNMSLLHVSHVISKPATETSSNAASGSPLEVKPSGRKELPEDLFTVKYSYFPAAVPGWQMIPSHGMGTSMPYNAVPMPSLQRPSKSTNPFDIGEPPVQTTAFALRSSLQGALPGVSTSGLMPPLSLSNPSLAWNPPGYGLMPPQQMQPHPSAMTTRPYMGQLVQTNMAMPRHQEIGSFGAEGAAFGFSNLNQHLSGTFSASASSNLSSAGRNPFG 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5308g00002 705 PANTHER ARFGAP/RECO-RELATED 1 705 IPR044820 GO:0005096
Pral5308g00002 705 MobiDBLite consensus disorder prediction 451 492 - -
Pral5308g00002 705 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Pral5308g00002 705 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Pral5308g00002 705 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Pral5308g00002 705 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Pral5308g00002 705 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Pral5308g00002 705 MobiDBLite consensus disorder prediction 451 474 - -
Pral5308g00002 705 MobiDBLite consensus disorder prediction 372 391 - -
Pral5308g00002 705 MobiDBLite consensus disorder prediction 137 153 - -
Pral5308g00002 705 MobiDBLite consensus disorder prediction 129 209 - -
Pral5308g00002 705 MobiDBLite consensus disorder prediction 258 280 - -
Pral5308g00002 705 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Pral5308g00002 705 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Pral5308g00002 705 CDD ArfGap_AGFG 12 122 - -
Pral5308g00002 705 MobiDBLite consensus disorder prediction 259 280 - -
Pral5308g00002 705 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Pral5308g00002 705 Gene3D Arf GTPase activating protein 1 135 IPR038508 -
Pral5308g00002 705 MobiDBLite consensus disorder prediction 171 185 - -
Pral5308g00002 705 MobiDBLite consensus disorder prediction 224 246 - -
Pral5308g00002 705 MobiDBLite consensus disorder prediction 505 526 - -
Pral5308g00002 705 MobiDBLite consensus disorder prediction 186 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5308g00002 Pral-Chr5308 12577 20534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5308g00002 12 122 C2H2 Transcription Factor Family AT4G05330 34.188 1.22e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5308g00002 - - pcin:129292898 1006.13