Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5308g00001 ATGGCAAATCGACTGAAGGAAGATGAGAAGAATGAGCGAATAATTCGAGGTCTTCTCAAACTTCCAGCGAACAGAAGATGTATTAATTGCGACAGTCTGGGGCCACAATATGTGTGCACAAATTTCATGACGTTTGTTTGCACAACCTGTGGTGGGATACACCGGGAATTTACGCATAGAGTAAAGTCAATATCGATGGCCAAGTTCACTTCACAAGAAGTTAGTGCACTTCAGGAAGGAGGAAATCAGCATGCAAAGGAAGTTTATTTTAAAGAATGGGACCCAAAAAGCCATTCTCTCCCTGATAACAGTAATGTTGGCAGGCTCCGCAACTTTATTAAACAAGTTTATGTGGATAAAAGATTCACTGGTGAGAGGACCTATGACAAATCACAGAGAGGTGACAAGGATAATTTCTCAGTAAACTCGAGAGTTCAATCATATCAGGGTGATCCTAAAAGTCCACCATATGATGACAAATATAAACACCGATATAGTGACAGCTCTAGTCCGGGTGGAAGAAGTCCTGGGTATGATCAAGAAAGTAGGCAGTACAGTAATGATAAGAGAAATCCTAGTCATCCTCCGATCAATGATTGGCATCAAGAAGATAGATTTGGAGATGGAAGGAGGTTTGAAGGTCGTATGGTATCTGATGGAGATTATAAGCTGGAAGGCCAATTGCCTGGGCAAGCCAACAACCCGGATTCCTCAAGCCCACCTGTGGTTCGGTCTGTTAGAGATATTTTGGGAGAAAATGCAGCGTCTCTTCAAATGAGTAAACCCTCTGAAACGAATAGTAAAAAAGCTAATGATGGCTCAGCTCTCACACAGAGGACTGTATGTTCCAGTAGCTTGACATCCAACATTGGAAACCCTGCAGAAGCTAAGCTTGAGACCCCTAAGAGTCTTATTGATTTTGGTGCTGAGCCTGAGCCTCCTCTGGCTCCAGCAATTACACACGCCCAACAAACTATTGCCCAATCCATTGTGGAGCAACCAAATTCCAGTGATGTCAACAATTGGGCCTCTTTTGATGTGCCCCCAGAAGTGAAAGCAACTCAAACTCCTTCAAATGTAAATTCACTAGAATCCATGCTTTCCCAATTGTCAGTATCATCATCATCACCACCAGCTCATGCTTCTCAAGTCCAGCATAGTTCCAGTGTTGTAGTACCCATTCCTGGGAGCACTATGACATTACAAAGAACTGGGAACTTATCTGTTTCACCTGCTGGGCCTGCACCAGCACCATCTCTTACTGCTACTGTTGTTGGAGCTGCACCTATCAGCACCTTTGCGCCTATTCCATCCAATAGTGCTTTAGCGTCACACCATCTGCAGCCTTTGTTCCCTCCCAATGTTGGTCAGTCTTCAAATTATCAGTCTACATCACCACCAGCAGGAGCATTAAATAATCAGCCATGGGGTATACCTCCAGCACCAACAATGCAAGGCCATCCAAACATGTCACTGCTACATGTGTCCCATGTTATCTCTAAGCCTGCCACTGAGACTAGCTCTAATGCGGCTTCAGGATCGCCTTTAGAAGTAAAACCAAGTGGAAGGAAAGAACTTCCTGAGGATCTTTTTACTGTAAAGTATTCTTACTTTCCTGCTGCAGTTCCGGGGTGGCAAATGATTCCTTCTCATGGGATGGGAACCTCAATGCCATATAATGCTGTGCCCATGCCAAGTCTTCAGCGACCATCAAAATCAACAAATCCATTTGATATTGGCGAACCACCAGTTCAAACCACAGCTTTTGCTTTGAGATCATCCTTGCAAGGTGCTCTGCCAGGGGTATCAACTTCAGGTTTAATGCCTCCTTTAAGCCTAAGTAATCCATCACTTGCGTGGAATCCACCTGGGTACGGATTAATGCCACCCCAACAAATGCAGCCTCATCCATCAGCAATGACAACAAGACCTTACATGGGGCAACTAGTGCAAACGAACATGGCAATGCCAAGGCATCAAGAAATTGGGAGCTTTGGTGCTGAGGGAGCCGCTTTTGGCTTCTCAAACTTGAATCAGCATCTCTCTGGTACATTTTCAGCCTCTGCTTCCTCAAATCTCTCTTCTGCAGGACGGAATCCATTTGGATGA 2109 0.4471 MANRLKEDEKNERIIRGLLKLPANRRCINCDSLGPQYVCTNFMTFVCTTCGGIHREFTHRVKSISMAKFTSQEVSALQEGGNQHAKEVYFKEWDPKSHSLPDNSNVGRLRNFIKQVYVDKRFTGERTYDKSQRGDKDNFSVNSRVQSYQGDPKSPPYDDKYKHRYSDSSSPGGRSPGYDQESRQYSNDKRNPSHPPINDWHQEDRFGDGRRFEGRMVSDGDYKLEGQLPGQANNPDSSSPPVVRSVRDILGENAASLQMSKPSETNSKKANDGSALTQRTVCSSSLTSNIGNPAEAKLETPKSLIDFGAEPEPPLAPAITHAQQTIAQSIVEQPNSSDVNNWASFDVPPEVKATQTPSNVNSLESMLSQLSVSSSSPPAHASQVQHSSSVVVPIPGSTMTLQRTGNLSVSPAGPAPAPSLTATVVGAAPISTFAPIPSNSALASHHLQPLFPPNVGQSSNYQSTSPPAGALNNQPWGIPPAPTMQGHPNMSLLHVSHVISKPATETSSNAASGSPLEVKPSGRKELPEDLFTVKYSYFPAAVPGWQMIPSHGMGTSMPYNAVPMPSLQRPSKSTNPFDIGEPPVQTTAFALRSSLQGALPGVSTSGLMPPLSLSNPSLAWNPPGYGLMPPQQMQPHPSAMTTRPYMGQLVQTNMAMPRHQEIGSFGAEGAAFGFSNLNQHLSGTFSASASSNLSSAGRNPFG 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5308g00001 702 PANTHER ARFGAP/RECO-RELATED 1 702 IPR044820 GO:0005096
Pral5308g00001 702 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Pral5308g00001 702 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Pral5308g00001 702 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Pral5308g00001 702 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Pral5308g00001 702 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Pral5308g00001 702 Gene3D Arf GTPase activating protein 1 134 IPR038508 -
Pral5308g00001 702 MobiDBLite consensus disorder prediction 255 277 - -
Pral5308g00001 702 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Pral5308g00001 702 MobiDBLite consensus disorder prediction 448 489 - -
Pral5308g00001 702 MobiDBLite consensus disorder prediction 127 206 - -
Pral5308g00001 702 MobiDBLite consensus disorder prediction 256 277 - -
Pral5308g00001 702 MobiDBLite consensus disorder prediction 448 471 - -
Pral5308g00001 702 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Pral5308g00001 702 MobiDBLite consensus disorder prediction 369 388 - -
Pral5308g00001 702 MobiDBLite consensus disorder prediction 168 182 - -
Pral5308g00001 702 MobiDBLite consensus disorder prediction 221 243 - -
Pral5308g00001 702 MobiDBLite consensus disorder prediction 502 523 - -
Pral5308g00001 702 MobiDBLite consensus disorder prediction 183 206 - -
Pral5308g00001 702 CDD ArfGap_AGFG 12 122 - -
Pral5308g00001 702 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5308g00001 Pral-Chr5308 12577 20535 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5308g00001 12 122 C2H2 Transcription Factor Family AT4G05330 34.188 1.28e-11 64.7