Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5303g00002 ATGTCAGCGACGCCGTCTCCCGGTGCTGCGCCGGCACCCAAGTCGCCGCCGGCTCCGGCGACCAACAATACTTCCCCTCCACCCAGCCCTTCAGCTCCTCCACCGTCCACACCAGCATCACCGCCGCCAGCTACGCCCTCTGCTCCGCCGCCAGCCACGCCCTCTGCTCCGCCGCCGGCGACTCCTTCATCTCCTCCTCCAGCTCCGGCTACACCTTCTCTGAGCCCTCCTTCTCCTTCCCCTCCATCATCAACCTCACCACCACCAGAATCTTCAGCGTCGCCTCCTCCACCGTCCAGTACCAACAGTCCACCGAGTCCGGCGAGTCACAGCCCGCCGTCTCCTCCATCGAGCTCAAATTCGCCGTCTCCTCCGTCGAGCTCAAATTCGCCTTCGACTCCGAATCGAAGTCCGCCGCCACCGTCTTCGTCGAAGTCGTCGCCGTCTCCACCTTCGTCATCGTCCTCATCGAGTAATATATCAACTGGGGTTGTTGTCGCCATTGCCGTGGGGGCTGTGGCGGTTCTTCTTGTGTTGAGTATTCTCTGCATTTGCTGTAGGAAGAAGAAGAGAAGACGTGATGAGGAATACTATGCGCCGCCGCCGGTACCGCCTCAGGGACCCAAAGTTGATCCATATGGTGGCCCACAGCGTCAGTGGCAACACAATGCTCCCCCTCCTTCAGATCACGTGGTCTCAGTAATGCCAAAGCCATCGCCTCCACCACCACCAGTTGCATCACGGCCTGCCCACTCACCCGTTTATGCTCCTCCACCGCCACCGCCTGCTTTCATAAGCAGCAGTGGTGGCTCTGGCTCTAACTATTCAGGCAGTGAAAACATTCTTCCACCTCCTTCTCCAGGCTTTGGACTGGGTTTCTCAAAGAGTACATTTACATATGAGGAGCTGGCCCGGGCAACAGATGGCTTCTCTGATGCCAACCTCCTTGGACAAGGTGGATTTGGCTATGTGCACAGAGGCATTCTTCCTAATGGAAAGGAAGTGGCTGTGAAGCAACTTAAGGCTGGAAGTGGGCAGGGGGAGCGTGAATTTCAAGCTGAAGTTGAGATTATTAGTAGGGTTCATCACAAACATCTTGTTTCTTTGGTTGGATACTGCATTACTGGGACACAGAGGTTGCTTGTTTATGAATTTGTTCCCAACAATACATTGGAGTTTCACTTGCACGGAAAAGGGAGGCCTACCATGGACTGGCCCACAAGACTGAAAATTGCTTTAGGATCAGCAAAAGGATTGGCGTATCTTCATGAGGACTGTCATCCTAAGATCATCCACCGTGATATCAAAGCTGCTAACATTCTTCTGGATTTTAAGTTTGAAGCAAAGGTGGCAGATTTTGGACTTGCAAAGTTTACGTCTGATATTAATACTCATGTTTCCACTCGAGTGATGGGGACATTTGGTTACCTGGCTCCAGAATATGCTTCTAGTGGGAAACTCACTGACAAATCAGATGTTTTCTCCTTTGGAGTCATGCTTCTGGAATTAATTACTGGACGCCGACCAGTTGATTCAGGGCATACATTTATGGAGGATGGTTTGGTAGACTGGGCAAGGCCTGTGCTCGCTCGTGCTTTAGAAGATGAAAATTTTGACTCCGTGGTTGATCCAAGACTCCAACATGAATATGACCCCAATGAGATGGCTCGTATGGTGGCATGTGCTGCAGCTTGCATACGACATTCAGCAAAGCGCAGGCCAAGGATGAGCCAGGTTGTTCGTGCTCTGGAAGGAGATGTATCTCTAGCGGACCTTAATGAAGGAATTAAGCCCGGCCATAGCTCTGTCTACAGTTCTCATGGAAGTTCAGATTATGACACAGTTCAATACAAGGAGGACATGAAAAAGTTCAGAAAAATGGCATTTGGTGGAGGAACCAATGAGTATGGTGCCAGTGGCGAGTACAGCGGACCACCTACGAGTGAGTATGGCTTGTATCCTTCTGGTTCAAGCAGTGAAGGCCAGAGTCGCCAGACCACAAGGGAAATGGAGCTGAGAAAGATGAAGAACAGCCAAGGTTTCAGTGGAAGTTCATAG 2058 0.5175 MSATPSPGAAPAPKSPPAPATNNTSPPPSPSAPPPSTPASPPPATPSAPPPATPSAPPPATPSSPPPAPATPSLSPPSPSPPSSTSPPPESSASPPPPSSTNSPPSPASHSPPSPPSSSNSPSPPSSSNSPSTPNRSPPPPSSSKSSPSPPSSSSSSSNISTGVVVAIAVGAVAVLLVLSILCICCRKKKRRRDEEYYAPPPVPPQGPKVDPYGGPQRQWQHNAPPPSDHVVSVMPKPSPPPPPVASRPAHSPVYAPPPPPPAFISSSGGSGSNYSGSENILPPPSPGFGLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGTQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFTSDINTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSFGVMLLELITGRRPVDSGHTFMEDGLVDWARPVLARALEDENFDSVVDPRLQHEYDPNEMARMVACAAACIRHSAKRRPRMSQVVRALEGDVSLADLNEGIKPGHSSVYSSHGSSDYDTVQYKEDMKKFRKMAFGGGTNEYGASGEYSGPPTSEYGLYPSGSSSEGQSRQTTREMELRKMKNSQGFSGSS 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5303g00002 685 MobiDBLite consensus disorder prediction 650 665 - -
Pral5303g00002 685 SUPERFAMILY Protein kinase-like (PK-like) 291 583 IPR011009 -
Pral5303g00002 685 MobiDBLite consensus disorder prediction 266 281 - -
Pral5303g00002 685 FunFam proline-rich receptor-like protein kinase PERK1 288 385 - -
Pral5303g00002 685 FunFam Proline-rich receptor-like protein kinase PERK1 386 594 - -
Pral5303g00002 685 Pfam Protein tyrosine and serine/threonine kinase 315 583 IPR001245 GO:0004672|GO:0006468
Pral5303g00002 685 SMART serkin_6 310 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5303g00002 685 Gene3D Phosphorylase Kinase; domain 1 291 385 - -
Pral5303g00002 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Pral5303g00002 685 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 171 651 IPR047117 -
Pral5303g00002 685 MobiDBLite consensus disorder prediction 193 283 - -
Pral5303g00002 685 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Pral5303g00002 685 MobiDBLite consensus disorder prediction 637 685 - -
Pral5303g00002 685 Gene3D Transferase(Phosphotransferase) domain 1 386 593 - -
Pral5303g00002 685 MobiDBLite consensus disorder prediction 231 265 - -
Pral5303g00002 685 ProSiteProfiles Protein kinase domain profile. 310 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5303g00002 685 MobiDBLite consensus disorder prediction 1 160 - -
Pral5303g00002 685 PRINTS Proline rich extensin signature 47 59 - -
Pral5303g00002 685 PRINTS Proline rich extensin signature 5 17 - -
Pral5303g00002 685 PRINTS Proline rich extensin signature 26 42 - -
Pral5303g00002 685 PRINTS Proline rich extensin signature 61 82 - -
Pral5303g00002 685 MobiDBLite consensus disorder prediction 9 147 - -
Pral5303g00002 685 CDD STKc_IRAK 316 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5303g00002 Pral-Chr5303 11024 14793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5303g00002 108 668 Trihelix Transcription Factor Family AT1G70460 48.841 1.57e-170 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Pral5303g00002 PK_Tyr_Ser-Thr 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5303g00002 - - gmx:100781944 806.594