Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5302g00013 ATGGGAGAAGGTGAGGGGGCAGATTGCCCTCCCAAGAATGTGTCATCGGATGCTTCAGGAGCAGCGTTGCTGTCTGATGTTCCGGCAAAGAAGCTGGCGAGGCAGCTCGATTTCACGGGTTATAGTGGCGCGGCCTTGCCTGAACACCCGCAGCCTCAGTTGCAGGTGCTGGCGCAGAGTCAGCCGCAGCCACGCCCAGTTACAACGCAACCGGTTGTTGTGATGCCTATGCCACCGCAGGCTCCTCATTCTTCAGCCAGGGTTGGGAAACCAGAATCTCCAAAATCAAGATCACGACCCAACTTTGATATGAAGGATGTTACTCCAAAGAAGCAAAAACAGTGTAATTGCAAACACTCAAAATGTCTAAAGTTATATTGTGAATGCTTTGCATCCGGAATATATTGTGATGGGTGCAACTGTGCAAACTGCTATAACAATGTTGAAAATGAAGCTGCTAGACGAGAAGCTGTTGAAGCCACTTTGGAGCGCAATCCAAATGCATTCAGGCCAAAAATTGCAAGCAGCCCTCATGGAGCACGTGATAGCAGGGAGGATGCTGGTGAAATTTTAATACTTGGAAAGCACAACAAGGGGTGCCATTGCAAAAAATCTGGATGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGCTCTGAAAATTGTAAATGCATGGACTGCAAAAATTTTGAGGGAAGTGAAGAGAGACAAGCTTTGTTCCATGGAGATCAGAATAATAACATGGCATATATCCAGCAGGCAGCAAATGCTGCCATAACCGGAGCAATTGGATCTTCTGGTTATTCATCCCCTCCAGTGTCCAAGAAAAGAAAAGGCCAGGAACTCTTCTTTGGGCCAACAAGCAAGGACACATCTGTTGGCAGGCTTGGCCAATTTCAACAGGCAAACCATATCAAAAGTCCTACACCGTCCTCATCCTTGTCTCCTGTCCCTGGTGCCCGTGTTGGAGCTGCAACATTAGGGCCTTCTAAATTTACATACAGATCCCTTTTAGCAGACATCATACAACCACACCACTTGAAGGAGCTTTGCTCCGTCCTGGTGCTAGTATCAGGACAAGCTGCAAAGACTCTTACAGACCAGAAAATGTTAATGGAAAAGAATGCAGAAGATCAGGTGGAAACTTCCGTGGCTTCTTCAACTCAAGAGCAATTGCCAAGTCGAAAGGAAGGCGATGTTGAGAAAGCTATGGCTGATGACTGTTCAAGTGCAAACCAAACAGATAAAATCAGCCCAGATAATTCTAGTTCAGATGGGGCTGATGCCCCAAAAAGCAGGCCAATGTCTCCTGGAACCTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTCATGACAGCTCCATCCCCTAATGGTTCAATGGGTCATGCTTGCAATACATCTTTGCGTTCTCCTTACGGACAAGGCATGACAGAGGTTTATGCAGAGCAAGAAAGGATTGTTTTGACAAAGTTCAGAGATTTTCTTAATCGGGTCATCACAATGGGAGAATTAAATGAAACAAAATGTTCTTCATTAACCAGAAGTGAATTAGAGACTCAGAAGGAGGCAATCAACAATGGCAGTGGAAATGCTGATGCTGAAACGGCGCATCAGCAGGGAGCCACCGGTAATGGAGCTGTCAACGCTGTTGTGCCACCCATGGCCTCTAGTATGAACATGATTGCTTCAGAGGCTCCTGGTAGCCTTGTCCCTGAAAATGGGGAAAGCAAGGCTAAGAGTGAAAAGGAGATGTAA 1767 0.4635 MGEGEGADCPPKNVSSDASGAALLSDVPAKKLARQLDFTGYSGAALPEHPQPQLQVLAQSQPQPRPVTTQPVVVMPMPPQAPHSSARVGKPESPKSRSRPNFDMKDVTPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCANCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGARDSREDAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMAYIQQAANAAITGAIGSSGYSSPPVSKKRKGQELFFGPTSKDTSVGRLGQFQQANHIKSPTPSSSLSPVPGARVGAATLGPSKFTYRSLLADIIQPHHLKELCSVLVLVSGQAAKTLTDQKMLMEKNAEDQVETSVASSTQEQLPSRKEGDVEKAMADDCSSANQTDKISPDNSSSDGADAPKSRPMSPGTLALMCDEQDTMFMTAPSPNGSMGHACNTSLRSPYGQGMTEVYAEQERIVLTKFRDFLNRVITMGELNETKCSSLTRSELETQKEAINNGSGNADAETAHQQGATGNGAVNAVVPPMASSMNMIASEAPGSLVPENGESKAKSEKEM 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5302g00013 588 Coils Coil 145 165 - -
Pral5302g00013 588 MobiDBLite consensus disorder prediction 1 20 - -
Pral5302g00013 588 MobiDBLite consensus disorder prediction 90 107 - -
Pral5302g00013 588 PANTHER TESMIN/TSO1-RELATED 48 507 IPR028307 -
Pral5302g00013 588 MobiDBLite consensus disorder prediction 379 442 - -
Pral5302g00013 588 MobiDBLite consensus disorder prediction 529 549 - -
Pral5302g00013 588 ProSiteProfiles CRC domain profile. 111 235 IPR005172 -
Pral5302g00013 588 MobiDBLite consensus disorder prediction 53 68 - -
Pral5302g00013 588 SMART CXC_2 195 236 IPR033467 -
Pral5302g00013 588 SMART CXC_2 110 150 IPR033467 -
Pral5302g00013 588 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 198 232 IPR005172 -
Pral5302g00013 588 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 112 147 IPR005172 -
Pral5302g00013 588 MobiDBLite consensus disorder prediction 410 432 - -
Pral5302g00013 588 MobiDBLite consensus disorder prediction 42 107 - -
Pral5302g00013 588 MobiDBLite consensus disorder prediction 529 552 - -
Pral5302g00013 588 MobiDBLite consensus disorder prediction 382 396 - -
Pral5302g00013 588 MobiDBLite consensus disorder prediction 566 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5302g00013 Pral-Chr5302 94561 105642 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5302g00013 1 522 CPP Transcription Factor Family AT4G29000 56.962 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pral5302g00013 TCR 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5302g00013 - - qsa:O6P43_007909 879.396