Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00066 ATGGGAAATTTATGGAGCAGCAGAAGAAGAAACAATTACTATCCCCCTCCCCCTCCCCCTCCCCCTCATCTACCACCTCCTTACTACTATTCCGCAGAATCCCATCTTCCCCCTCCCCCACCGCCACCTCAGCCGCAAGGCTATTATGTGACCAATTCTTACGTCAATACGCCTTCTCTGCCTCCGCCGCCGCCGCCGTGTCATCCTCACGCCCATTCATTCAGTTACTCAAATGGGCACAGCTATTGCCCCAACTATGGCAATTCTATGACGGGTCGTTTTCACTACCAACCTTATTATGTAAATCAGGGTACTGGTGGCTGGCCTCCGATTCGTCCTCCTCTTGCGCCTGCCAATCCCCCACCGCCCTATCTCGATCATCAAACCGCTAGGAAGGTCAAAAATGAGGTCAACGTGCATAAAGATACTTTGCGGCTAGAGTTGGATGAGCACAATCCTGACCATCACTTGGTTTCGTTTGTTTTCGATGCCCTATATGATGGGAGCATTTCTATAATCTACTTTGCCAAGGAAGTAGAACCTTGCAAGTTCATTCCACAGTTTCCTGAAATTGATCCAGTCAGAATCCCTTTTCAGAAAGGCGCTGGACAAAAGTTTTGTCAGCCTTCAGGAACTGGCATTGACTTGGGCTTCTTTGAGTTGGATGATCTCTCGAAACCCTCACAAGGTGAAGATGTCTTTCCTCTTGTGGTATGTGCTGTAACACATTCGGGAGCTCCAGCAGATGAAAGCTTTGGTGATTCGATGGCTGATGCATCACCTAATAAGCAGATAACTCAAGCTGTTATTGAGAAAAGCAATGGTAGTGGTTCTTTCCAGGTTAAGGTAATTAAGCAGATTTTGTGGATTGATGGAGCCCGTTATGAATTAAGAGAGATATATGGAATTGGAGGCTCAGCAGCAGCAGATTTCAATGACACTGATCCTGAGAAGGAGGAGTGTGTCATATGCATGACTGAACCAAAGGACACTGCTGTCTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGCGCCAAAGCATTGAGGCTCCAATCAAATAAATGCCCTATTTGCCGTCAGTCCATTGAGGAGCTTATAGAGATCAAGATAAATAATGGTAATCAATGA 1131 0.4642 MGNLWSSRRRNNYYPPPPPPPPHLPPPYYYSAESHLPPPPPPPQPQGYYVTNSYVNTPSLPPPPPPCHPHAHSFSYSNGHSYCPNYGNSMTGRFHYQPYYVNQGTGGWPPIRPPLAPANPPPPYLDHQTARKVKNEVNVHKDTLRLELDEHNPDHHLVSFVFDALYDGSISIIYFAKEVEPCKFIPQFPEIDPVRIPFQKGAGQKFCQPSGTGIDLGFFELDDLSKPSQGEDVFPLVVCAVTHSGAPADESFGDSMADASPNKQITQAVIEKSNGSGSFQVKVIKQILWIDGARYELREIYGIGGSAAADFNDTDPEKEECVICMTEPKDTAVLPCRHMCMCSECAKALRLQSNKCPICRQSIEELIEIKINNGNQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00066 376 PANTHER MAHOGUNIN 1 370 IPR045194 GO:0061630
Pral5300g00066 376 SMART ring_2 321 359 IPR001841 -
Pral5300g00066 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 375 IPR013083 -
Pral5300g00066 376 ProSiteProfiles Zinc finger RING-type profile. 321 360 IPR001841 -
Pral5300g00066 376 CDD mRING-HC-C3HC5_MGRN1-like 320 360 IPR045195 -
Pral5300g00066 376 SUPERFAMILY RING/U-box 315 366 - -
Pral5300g00066 376 MobiDBLite consensus disorder prediction 12 47 - -
Pral5300g00066 376 FunFam probable E3 ubiquitin-protein ligase LOG2 304 370 - -
Pral5300g00066 376 Pfam Zinc finger, C3HC4 type (RING finger) 318 365 - -
Pral5300g00066 376 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00066 Pral-Chr5300 383101 388014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00066 43 376 C3H Transcription Factor Family AT3G06140 52.464 3.60e-101 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00066 - - qsa:O6P43_021626 496.123