Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00064 ATGTCTCACATCACTGTCGAGAGGAACAGAAGACGACAGATGAATGAACATCTCAAAGTTTTAAGATCACTGACCCCATGTTTCTATATCAAGAGGGGAGACCAAGCATCCATAATAGGGGGTGTGATAGAATTCATCAAGGAGTTACACCAAGTTGTGGAAGCGTTGGAGTCCAAGAAAAAGAGGAAGAGTCTAAGCCCTAGCCCTCGTGGTCCTCCTCCTGCAACACCTGATCATCAAGCCACCGATAGTCCTTTGGGAATTGGAATTGGATCTGCCGATTCCTTCAAAGAATTCGGAGCAGCAGTTAGCTGCAACTCTTCAGTTGCACATGTGGAAGTCAAAATCTCAGGCCCCAACGTGATACTGAAAGTGATCTCTCACAGGATTCCAGGTCAACTTGCCAAGATAATAGCTGTTTTAGAAAGGCTTTCTCTTCAAGTTCTTCACCTCAACATCAGTAGCATGGAGGATACGGTTCTCCACCACTTTGTTGTCAAGATAGGACTGAACTGTCAACTAAGTCTGGAGGAACTAGCAATGGAAGTGCAAGGAAGCTTCCGCTCAGACGCTGTTACCAATACTGCAGCAACTAGCGCTTAA 603 0.4561 MSHITVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVVEALESKKKRKSLSPSPRGPPPATPDHQATDSPLGIGIGSADSFKEFGAAVSCNSSVAHVEVKISGPNVILKVISHRIPGQLAKIIAVLERLSLQVLHLNISSMEDTVLHHFVVKIGLNCQLSLEELAMEVQGSFRSDAVTNTAATSA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00064 200 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Pral5300g00064 200 PANTHER TRANSCRIPTION FACTOR FAMA 1 187 IPR044283 GO:0003700|GO:0010052
Pral5300g00064 200 SMART finulus 4 55 IPR011598 GO:0046983
Pral5300g00064 200 MobiDBLite consensus disorder prediction 58 84 - -
Pral5300g00064 200 FunFam Transcription factor MUTE 1 66 - -
Pral5300g00064 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 67 IPR036638 GO:0046983
Pral5300g00064 200 Gene3D - 1 64 IPR036638 GO:0046983
Pral5300g00064 200 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00064 Pral-Chr5300 362648 364232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00064 1 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 65.366 1.42e-84 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5300g00064 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00064 - - pcin:129310160 288.5