Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral5300g00064 | ATGTCTCACATCACTGTCGAGAGGAACAGAAGACGACAGATGAATGAACATCTCAAAGTTTTAAGATCACTGACCCCATGTTTCTATATCAAGAGGGGAGACCAAGCATCCATAATAGGGGGTGTGATAGAATTCATCAAGGAGTTACACCAAGTTGTGGAAGCGTTGGAGTCCAAGAAAAAGAGGAAGAGTCTAAGCCCTAGCCCTCGTGGTCCTCCTCCTGCAACACCTGATCATCAAGCCACCGATAGTCCTTTGGGAATTGGAATTGGATCTGCCGATTCCTTCAAAGAATTCGGAGCAGCAGTTAGCTGCAACTCTTCAGTTGCACATGTGGAAGTCAAAATCTCAGGCCCCAACGTGATACTGAAAGTGATCTCTCACAGGATTCCAGGTCAACTTGCCAAGATAATAGCTGTTTTAGAAAGGCTTTCTCTTCAAGTTCTTCACCTCAACATCAGTAGCATGGAGGATACGGTTCTCCACCACTTTGTTGTCAAGATAGGACTGAACTGTCAACTAAGTCTGGAGGAACTAGCAATGGAAGTGCAAGGAAGCTTCCGCTCAGACGCTGTTACCAATACTGCAGCAACTAGCGCTTAA | 603 | 0.4561 | MSHITVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVVEALESKKKRKSLSPSPRGPPPATPDHQATDSPLGIGIGSADSFKEFGAAVSCNSSVAHVEVKISGPNVILKVISHRIPGQLAKIIAVLERLSLQVLHLNISSMEDTVLHHFVVKIGLNCQLSLEELAMEVQGSFRSDAVTNTAATSA | 200 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral5300g00064 | 200 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 1 | 49 | IPR011598 | GO:0046983 | |
Pral5300g00064 | 200 | PANTHER | TRANSCRIPTION FACTOR FAMA | 1 | 187 | IPR044283 | GO:0003700|GO:0010052 | |
Pral5300g00064 | 200 | SMART | finulus | 4 | 55 | IPR011598 | GO:0046983 | |
Pral5300g00064 | 200 | MobiDBLite | consensus disorder prediction | 58 | 84 | - | - | |
Pral5300g00064 | 200 | FunFam | Transcription factor MUTE | 1 | 66 | - | - | |
Pral5300g00064 | 200 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 1 | 67 | IPR036638 | GO:0046983 | |
Pral5300g00064 | 200 | Gene3D | - | 1 | 64 | IPR036638 | GO:0046983 | |
Pral5300g00064 | 200 | Pfam | Helix-loop-helix DNA-binding domain | 2 | 49 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral5300g00064 | Pral-Chr5300 | 362648 | 364232 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral5300g00064 | 1 | 192 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G06120 | 65.366 | 1.42e-84 | 247 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Pral5300g00064 | HLH | 1.3e-07 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral5300g00064 | - | - | pcin:129310160 | 288.5 |