Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00051 ATGGATAATTTCACCTCTTCTTCTTCTTCTCTTCCTCCTCCTCCTACACCCATGCCCGACATTCTGCCCGCATCGGCTTCATCCTCTTCTGCAGCTTTCGACGACGGTTCCGAGGACTTCTGCAGTATTTGTCTTGAGCCCTTCAGCACCGATGACCCTGCTACTATAACAAATTGCAAACATGAATATCATCTGCACTGTATTCTTGAATGGTCTCAGAGAAGCAAGGAGTGCCCAATCTGTTGGCAGATACTTGTCTTGAAGGACCCTGCCAACCAAGAACTTCTAGCTGCGGTGGAAGCTGAAAAACGCATAAGGTCAAGAGGCTCATATTCATCTGCATTCCCACATCCTCGTACCCCCATTGAACGGTTTAATGTGGAACAGGATGATTCTTGTTCCGATGACTCCGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTGCTGCAAGTAGAGCCCATTATTTTCGTAGAAGGGATGTGCAAAGATCATCTGGAGTAGGTCCATCTAGGATTCCTGTAGTTGAATCTTCATTGCATGTCTCTGGGCTGCAACCAGTGCATACAACTTCACCTTCTGGAGATAGTTCACCTAGTTCCACTTCTGCTGCTGGCATTCAACCTCCACCGCCTGCCCCTTCTTCTGTTGAAGCAATTCCAGGAAATTCCACTCCTGATACCCATGACCCTTTCAAAGCCAGAGTTCTTTATAGCCAGCCACCATCCGAGAGTGTGAGAAGACTGAACACTTCTGAGATGTTTACTTTCCCTGAGTCCATCAAGACCAAATTTTCTGCTGCTTCAGCTAGATATAAAGAATCTATTTCAAAAGGTACACGTGGTCTTAAAGAGAAGTTACTTGCTCATAATGCCTCAGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCTGGCATCGCTGGTGTTGCACGGATGATTGAACGCCTTGATCTCGGCTCAAAACAGGCTACTGCTTCTCCTTCCATGCCCAGCTCTACCGAGGGAACTTCTGGCTTCCCCTCTAAAGGAAAGACTGTCCAAGAAAATGGTAGTGGACAGTCTCTTCACTCTGCCGTTGAGGAAGAGAGTGGAGTAGTCATTCATGATGTTAGATCAGGTCCACCTGCACAGGTTTCCAGTGCCACAGTTAGTCCAGTAGGGTACCCTCATCCACATGTTCAGAGTGGGTGTGATGCGGTGAAGACTTAG 1218 0.4704 MDNFTSSSSSLPPPPTPMPDILPASASSSSAAFDDGSEDFCSICLEPFSTDDPATITNCKHEYHLHCILEWSQRSKECPICWQILVLKDPANQELLAAVEAEKRIRSRGSYSSAFPHPRTPIERFNVEQDDSCSDDSDFDEQIMQHLVAAASRAHYFRRRDVQRSSGVGPSRIPVVESSLHVSGLQPVHTTSPSGDSSPSSTSAAGIQPPPPAPSSVEAIPGNSTPDTHDPFKARVLYSQPPSESVRRLNTSEMFTFPESIKTKFSAASARYKESISKGTRGLKEKLLAHNASVKELSKGVQREMNAGIAGVARMIERLDLGSKQATASPSMPSSTEGTSGFPSKGKTVQENGSGQSLHSAVEEESGVVIHDVRSGPPAQVSSATVSPVGYPHPHVQSGCDAVKT 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00051 405 FunFam E3 ubiquitin-protein ligase RHF1A 26 93 - -
Pral5300g00051 405 SUPERFAMILY RING/U-box 35 88 - -
Pral5300g00051 405 MobiDBLite consensus disorder prediction 180 233 - -
Pral5300g00051 405 Pfam Ring finger domain 41 81 IPR001841 -
Pral5300g00051 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 97 IPR013083 -
Pral5300g00051 405 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 6 90 - -
Pral5300g00051 405 SMART ring_2 41 81 IPR001841 -
Pral5300g00051 405 MobiDBLite consensus disorder prediction 323 405 - -
Pral5300g00051 405 MobiDBLite consensus disorder prediction 183 204 - -
Pral5300g00051 405 MobiDBLite consensus disorder prediction 1 30 - -
Pral5300g00051 405 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Pral5300g00051 405 MobiDBLite consensus disorder prediction 324 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00051 Pral-Chr5300 304479 308174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00051 35 92 C3H Transcription Factor Family AT4G00335 46.552 2.00e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00051 K19043 - qsa:O6P43_021605 410.609