Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00050 ATGCGAAGCCCATGTTCCCCGGCATATATTAGACAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGACAAGCATTGCCTTCTCTTTTATCTGGTCGCGATTGCATACTTCATGCTCAGGTTCTGGGAAGACGCTCGCATACGTGCTTCTGATATATTCCGTCATAGACGCTGCAAAATCTGCCGTGCAAGCTCTTGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGAGGTTGAGAAGGAGCACAAGTCATATACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAATGATAGTAGTCGCAACAGTGGGGAGTTTATGCCATATAATTGAAAGACAATTTTTAAAGCTAGAAACTGTGCGGGTGTTAGTAGTGGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAACTTTTAACTCTGTATTCGTCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCGTCTATACCACAACACAGGCGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGGTCCATATTCATGTCAGCCCAGTTGAGCCCATGCCATCACGCCTGCATCATAGATTTGTAGTATGTCATAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGCCAGTGAGCAGTCTAAGAGGTCAAAACAGGCAGGAAATGCTCCATCAACGTCCCTTCTGGTTGACTTTCTGAAGACTTCATACCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGATATGAATTTCAATTCACGGGCAGTTTCACTGTTGGAGGCAAGGAAAGGTGGCGGCTCTCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCGGAAATGTCCCACATTTACAACTTTGATCTGCCCAAGACTGCCATAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACTATCATAGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTTATAA 1191 0.4366 MRSPCSPAYIRQDGRDWICHAYRCPETSIAFSFIWSRLHTSCSGSGKTLAYVLLIYSVIDAAKSAVQALVVVPTRELGMQVAKVARMLAASPTEVEKEHKSYTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLETVRVLVVDEVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPSRLHHRFVVCHRNKKQQTLLSLIQSDAPESGIIFASEQSKRSKQAGNAPSTSLLVDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEARKGGGSLLVATDIASRGVDLPEMSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNCEELTL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00050 396 CDD SF2_C_DEAD 227 358 - -
Pral5300g00050 396 Pfam Helicase conserved C-terminal domain 239 358 IPR001650 -
Pral5300g00050 396 CDD DEADc 13 203 - -
Pral5300g00050 396 Gene3D - 28 207 IPR027417 -
Pral5300g00050 396 SMART helicmild6 276 360 IPR001650 -
Pral5300g00050 396 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 41 387 - -
Pral5300g00050 396 Gene3D - 223 394 IPR027417 -
Pral5300g00050 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 363 IPR027417 -
Pral5300g00050 396 Pfam DEAD/DEAH box helicase 43 194 IPR011545 GO:0003676|GO:0005524
Pral5300g00050 396 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 396 IPR001650 -
Pral5300g00050 396 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 210 IPR014001 -
Pral5300g00050 396 SMART ultradead3 3 230 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00050 Pral-Chr5300 298872 302351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00050 38 379 Eukaryotic Initiation Factors Gene Family AT3G13920 26.225 2.18e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00050 - - ahf:112763379 599.356