Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00049 ATGCGAAGCCCATGTTCCCCGGCATATATTAGACAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGACAAGCATTGCCTTCTCTTTTATCTGGTCGCGATTGCATACTTCATGCTCAGGTTCTGGGAAGACGCTCGCATACGTGCTTCTGATATATTCCGTCATAGACGCTGCAAAATCTGCCGTGCAAGCTCTTGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGAGGTTGAGAAGGAGCACAAGTCATATACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAATGATAGTAGTCGCAACAGTGGGGAGTTTATGCCATATAATTGAAAGACAATTTTTAAAGCTAGAAACTGTGCGGGTGTTAGTAGTGGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAACTTTTAACTCTGTATTCGTCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCGTCTATACCACAACACAGGCGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGGTCCATATTCATGTCAGCCCAGTTGAGCCCATGCCATCACGCCTGCATCATAGATTTGTAGTATGTCATAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGCCAGTGAGCAGAGGTCAAAACAGGCAGGAAATGCTCCATCAACGTCCCTTCTGGTTGACTTTCTGAAGACTTCATACCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGATATGAATTTCAATTCACGGGCAGTTTCACTGTTGGAGGCAAGGAAAGGTGGCGGCTCTCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCGGAAATGTCCCACATTTACAACTTTGATCTGCCCAAGACTGCCATAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACTATCATAGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTTATAA 1185 0.4371 MRSPCSPAYIRQDGRDWICHAYRCPETSIAFSFIWSRLHTSCSGSGKTLAYVLLIYSVIDAAKSAVQALVVVPTRELGMQVAKVARMLAASPTEVEKEHKSYTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLETVRVLVVDEVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPSRLHHRFVVCHRNKKQQTLLSLIQSDAPESGIIFASEQRSKQAGNAPSTSLLVDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEARKGGGSLLVATDIASRGVDLPEMSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNCEELTL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00049 394 Gene3D - 28 207 IPR027417 -
Pral5300g00049 394 CDD DEADc 13 203 - -
Pral5300g00049 394 Pfam Helicase conserved C-terminal domain 239 356 IPR001650 -
Pral5300g00049 394 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 41 385 - -
Pral5300g00049 394 Gene3D - 223 392 IPR027417 -
Pral5300g00049 394 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 361 IPR027417 -
Pral5300g00049 394 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 239 394 IPR001650 -
Pral5300g00049 394 Pfam DEAD/DEAH box helicase 43 194 IPR011545 GO:0003676|GO:0005524
Pral5300g00049 394 CDD SF2_C_DEAD 227 356 - -
Pral5300g00049 394 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 210 IPR014001 -
Pral5300g00049 394 SMART helicmild6 274 358 IPR001650 -
Pral5300g00049 394 SMART ultradead3 3 230 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00049 Pral-Chr5300 298872 302351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00049 38 377 Eukaryotic Initiation Factors Gene Family AT3G13920 26.377 6.49e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00049 - - ahf:112763379 592.423