Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00048 ATGCGAAGCCCATGTTCCCCGGCATATATTAGACAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGACAAGCATTGCCTTCTCTTTTATCTGGTCGCGATTGCATACTTCATGCTCAGGTTCTGGGAAGACGCTCGCATACGTGCTTCTGATATATTCCGTCATAGACGCTGCAAAATCTGCCGTGCAAGCTCTTGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGAGGTTGAGAAGGAGCACAAGTCATATACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCAATGATAGTAGTCGCAACAGTGGGGAGTTTATGCCATATAATTGAAAGACAATTTTTAAAGCTAGAAACTGTGCGGGTGTTAGTAGTGGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAACTTTTAACTCTGTATTCGTCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCGTCTATACCACAACACAGGCGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGGTATGTCATAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGCCAGTGAGCAGTCTAAGAGGTCAAAACAGGCAGGAAATGCTCCATCAACGTCCCTTCTGGTTGACTTTCTGAAGACTTCATACCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGATATGAATTTCAATTCACGGGCAGTTTCACTGTTGGAGGCAAGGAAAGGTGGCGGCTCTCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCGGAAATGTCCCACATTTACAACTTTGATCTGCCCAAGACTGCCATAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACTATCATAGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTTATAA 1122 0.434 MRSPCSPAYIRQDGRDWICHAYRCPETSIAFSFIWSRLHTSCSGSGKTLAYVLLIYSVIDAAKSAVQALVVVPTRELGMQVAKVARMLAASPTEVEKEHKSYTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLETVRVLVVDEVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKVCHRNKKQQTLLSLIQSDAPESGIIFASEQSKRSKQAGNAPSTSLLVDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEARKGGGSLLVATDIASRGVDLPEMSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNCEELTL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00048 373 Gene3D - 7 202 IPR027417 -
Pral5300g00048 373 CDD DEADc 13 203 - -
Pral5300g00048 373 Gene3D - 203 373 IPR027417 -
Pral5300g00048 373 SMART ultradead3 3 218 IPR014001 -
Pral5300g00048 373 Pfam DEAD/DEAH box helicase 43 194 IPR011545 GO:0003676|GO:0005524
Pral5300g00048 373 CDD SF2_C_DEAD 203 335 - -
Pral5300g00048 373 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 373 IPR001650 -
Pral5300g00048 373 SMART helicmild6 253 337 IPR001650 -
Pral5300g00048 373 Pfam Helicase conserved C-terminal domain 216 335 IPR001650 -
Pral5300g00048 373 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 210 IPR014001 -
Pral5300g00048 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 340 IPR027417 -
Pral5300g00048 373 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 41 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00048 Pral-Chr5300 298872 302351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00048 38 362 Eukaryotic Initiation Factors Gene Family AT1G72730 26.000 1.88e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00048 - - ahf:112763379 543.117