Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5300g00047 ATGCGAAGCCCATGTTCCCCGGCATATATTAGACAGGATGGAAGAGATTGGATATGTCATGCCTACAGATGTCCAGAGACAAGCATTGCCTTCTCTTTTATCTGGTCGCGATTGCATACTTCATGCTCAGGTTCTGGGAAGACGCTCGCATACGTGCTTCTGATATATTCCGTCATAGACGCTGCAAAATCTGCCGTGCAAGCTCTTGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGATGTTGGCAGCAAGTCCGACAGAGGTTGAGAAGGAGCACAAGTCATATACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTCAGTTCCCTTCGAAAACTTTTAACTCTGTATTCGTCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCGTCTATACCACAACACAGGCGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGATGTGGTCCATATTCATGTCAGCCCAGTTGAGCCCATGCCATCACGCCTGCATCATAGATTTGTAGTATGTCATAGGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGCCAGTGAGCAGTCTAAGAGGTCAAAACAGGCAGGAAATGCTCCATCAACGTCCCTTCTGGTTGACTTTCTGAAGACTTCATACCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGATATGAATTTCAATTCACGGGCAGTTTCACTGTTGGAGGCAAGGAAAGGTGGCGGCTCTCTTCTTGTAGCAACAGATATAGCTTCAAGAGGAGTTGACCTTCCGGAAATGTCCCACATTTACAACTTTGATCTGCCCAAGACTGCCATAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACTATCATAGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTTATAA 1086 0.4383 MRSPCSPAYIRQDGRDWICHAYRCPETSIAFSFIWSRLHTSCSGSGKTLAYVLLIYSVIDAAKSAVQALVVVPTRELGMQVAKVARMLAASPTEVEKEHKSYTVMALLDGGTLRRHKSWLKVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPSRLHHRFVVCHRNKKQQTLLSLIQSDAPESGIIFASEQSKRSKQAGNAPSTSLLVDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEARKGGGSLLVATDIASRGVDLPEMSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNCEELTL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5300g00047 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 357 IPR027417 -
Pral5300g00047 361 Gene3D - 3 129 IPR027417 -
Pral5300g00047 361 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 41 121 - -
Pral5300g00047 361 Gene3D - 188 359 IPR027417 -
Pral5300g00047 361 CDD SF2_C_DEAD 192 323 - -
Pral5300g00047 361 SMART helicmild6 241 325 IPR001650 -
Pral5300g00047 361 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 175 IPR014001 -
Pral5300g00047 361 Pfam DEAD/DEAH box helicase 43 131 IPR011545 GO:0003676|GO:0005524
Pral5300g00047 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 195 IPR027417 -
Pral5300g00047 361 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 204 361 IPR001650 -
Pral5300g00047 361 Pfam Helicase conserved C-terminal domain 204 323 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5300g00047 Pral-Chr5300 298872 302351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5300g00047 38 344 Eukaryotic Initiation Factors Gene Family AT3G13920 25.519 4.62e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5300g00047 - - ahf:112763379 531.561